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The map label for this gene is yqxC [H]

Identifier: 220931498

GI number: 220931498

Start: 709707

End: 710525

Strand: Direct

Name: yqxC [H]

Synonym: Hore_06540

Alternate gene names: 220931498

Gene position: 709707-710525 (Clockwise)

Preceding gene: 220931497

Following gene: 220931499

Centisome position: 27.53

GC content: 39.56

Gene sequence:

>819_bases
ATGGCCCGGAAAAAACGCCTAGATATTTTATTAACAGATAAGGGTTTTTTTGAAACAAGAAGCCGGGCTAAAAGGGCAAT
AATGGCCGGAGATGTATTGGTTAATGGTCAGCTGGAAACAAAGGCTGGAACCAGGGTTAGTGAAGATGTTAAAATCAGAG
TTAAAAATAAAATTCCCTATGTAAGTCGTGGCGGATTGAAACTCGAGAAAGCCCTTAATAACTTTGATATTAATGTTGAT
GGGAAAGAAGCTATTGATATCGGGGCTTCAACCGGAGGGTTTACTGATTGCCTTCTCCAGCATGGAGCCCGGAAGGTTTA
TGCTATAGATGTTGGATACGGTCAGCTGGCCTGGAAGTTAAGGCAGGATAACAGGGTCGAAGTTCTAGAGCGGACTAATT
TTAGATATCTTACACCTGAAGATTTACCTGTTAAAGTACCCATAATAGTCAGTGATGTATCGTTTATTTCATTGAGGTTG
ATTATTCCACCTGCCCTGAAGTTTTTAACTGAAAACGGGGATATAATCTGTTTGATTAAACCCCAGTTTGAGGCAGGTCC
TGATAGAGTTGGGAAAAATGGTGTAGTTAAAGAAAAAAAGGTCCACCGTCAGGTTCTTAAAGAGATGTTTGATTTTTTTA
TTGGTCAGGGACTGTCAATTGTTAACCTGGACTATTCTCCAATTACCGGGGCTTCCAGTAAAAATATTGAGTTTTTAGTC
CAGTTAAAAAAAACGGTTGATACCGATTTTGACAGTAATTACTGGGATAAACGAATCAATAAAGTAATATCGCAGGCCCA
TAAGAGGTTAGGGGGTTGA

Upstream 100 bases:

>100_bases
ATGGACCTACCGGCCATCTCCAGACAATTTATCATATAGACAAAAATGCGATTATAGAATCTGCCTTAAAGTTAGTTGAC
GAAAGGGTGGAATTAGGTCT

Downstream 100 bases:

>100_bases
TATAAATTTTAACAGTAGGGGTTGTCCTTAATACCGATAAAAAAGAGGGATTTAATATAGTTTGTTCGTTTTTAAACATG
TTGGAAAAAAGGGGATTAAA

Product: hemolysin A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 272; Mature: 271

Protein sequence:

>272_residues
MARKKRLDILLTDKGFFETRSRAKRAIMAGDVLVNGQLETKAGTRVSEDVKIRVKNKIPYVSRGGLKLEKALNNFDINVD
GKEAIDIGASTGGFTDCLLQHGARKVYAIDVGYGQLAWKLRQDNRVEVLERTNFRYLTPEDLPVKVPIIVSDVSFISLRL
IIPPALKFLTENGDIICLIKPQFEAGPDRVGKNGVVKEKKVHRQVLKEMFDFFIGQGLSIVNLDYSPITGASSKNIEFLV
QLKKTVDTDFDSNYWDKRINKVISQAHKRLGG

Sequences:

>Translated_272_residues
MARKKRLDILLTDKGFFETRSRAKRAIMAGDVLVNGQLETKAGTRVSEDVKIRVKNKIPYVSRGGLKLEKALNNFDINVD
GKEAIDIGASTGGFTDCLLQHGARKVYAIDVGYGQLAWKLRQDNRVEVLERTNFRYLTPEDLPVKVPIIVSDVSFISLRL
IIPPALKFLTENGDIICLIKPQFEAGPDRVGKNGVVKEKKVHRQVLKEMFDFFIGQGLSIVNLDYSPITGASSKNIEFLV
QLKKTVDTDFDSNYWDKRINKVISQAHKRLGG
>Mature_271_residues
ARKKRLDILLTDKGFFETRSRAKRAIMAGDVLVNGQLETKAGTRVSEDVKIRVKNKIPYVSRGGLKLEKALNNFDINVDG
KEAIDIGASTGGFTDCLLQHGARKVYAIDVGYGQLAWKLRQDNRVEVLERTNFRYLTPEDLPVKVPIIVSDVSFISLRLI
IPPALKFLTENGDIICLIKPQFEAGPDRVGKNGVVKEKKVHRQVLKEMFDFFIGQGLSIVNLDYSPITGASSKNIEFLVQ
LKKTVDTDFDSNYWDKRINKVISQAHKRLGG

Specific function: Unknown

COG id: COG1189

COG function: function code J; Predicted rRNA methylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004538
- InterPro:   IPR002877
- InterPro:   IPR002942 [H]

Pfam domain/function: PF01728 FtsJ; PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 30535; Mature: 30404

Theoretical pI: Translated: 10.22; Mature: 10.22

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARKKRLDILLTDKGFFETRSRAKRAIMAGDVLVNGQLETKAGTRVSEDVKIRVKNKIPY
CCCCCEEEEEEECCCCHHHHHHHHHHEEECCEEECCEEECCCCCCCCCCEEEEEECCCCE
VSRGGLKLEKALNNFDINVDGKEAIDIGASTGGFTDCLLQHGARKVYAIDVGYGQLAWKL
ECCCCEEHHHHHCCCCCCCCCCHHEEECCCCCCHHHHHHHCCCCEEEEEECCCCEEEEEE
RQDNRVEVLERTNFRYLTPEDLPVKVPIIVSDVSFISLRLIIPPALKFLTENGDIICLIK
CCCCCEEEEECCCEEEECCCCCCEEEEEEEECCCEEEEEEECCHHHHHHCCCCCEEEEEC
PQFEAGPDRVGKNGVVKEKKVHRQVLKEMFDFFIGQGLSIVNLDYSPITGASSKNIEFLV
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHEEE
QLKKTVDTDFDSNYWDKRINKVISQAHKRLGG
EEHHHHCCCCCCCHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
ARKKRLDILLTDKGFFETRSRAKRAIMAGDVLVNGQLETKAGTRVSEDVKIRVKNKIPY
CCCCEEEEEEECCCCHHHHHHHHHHEEECCEEECCEEECCCCCCCCCCEEEEEECCCCE
VSRGGLKLEKALNNFDINVDGKEAIDIGASTGGFTDCLLQHGARKVYAIDVGYGQLAWKL
ECCCCEEHHHHHCCCCCCCCCCHHEEECCCCCCHHHHHHHCCCCEEEEEECCCCEEEEEE
RQDNRVEVLERTNFRYLTPEDLPVKVPIIVSDVSFISLRLIIPPALKFLTENGDIICLIK
CCCCCEEEEECCCEEEECCCCCCEEEEEEEECCCEEEEEEECCHHHHHHCCCCCEEEEEC
PQFEAGPDRVGKNGVVKEKKVHRQVLKEMFDFFIGQGLSIVNLDYSPITGASSKNIEFLV
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHEEE
QLKKTVDTDFDSNYWDKRINKVISQAHKRLGG
EEHHHHCCCCCCCHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377; 2507400 [H]