Click here to switch to the map view.

The map label for this gene is yhcV [H]

Identifier: 220931478

GI number: 220931478

Start: 684410

End: 684835

Strand: Reverse

Name: yhcV [H]

Synonym: Hore_06340

Alternate gene names: 220931478

Gene position: 684835-684410 (Counterclockwise)

Preceding gene: 220931479

Following gene: 220931433

Centisome position: 26.56

GC content: 45.31

Gene sequence:

>426_bases
ATGAAGCTAAAAGATATTATGACCAGTGATGTAACCAGTATCAATCCCAATTCCTCTGTTAAAGATGCAGCCCAGGTAAT
GCGTTCTCTTAATGTTGGTTCCGTTCCTGTAACCGATGGTAACAGGCCAGTAGGTATAATTACTGACAGAGATATAACAA
TAAGAAGTGTAGCCCAGGCCGGTAACATTAACATGCCAGTACACCAGGTCATGACGGGAGACATTGTCTACGGTACCCCT
GATATGTCTGTTGAAGAAGCAGCCCAAATCATGGCCAGTAAACAAATCAGGCGCCTCCCGGTTGTGGAAAATGGCAGATT
AGTAGGTATTGTATCTCTAGGAGACCTGGCTGTCAGGGAAAGGTCTGATATAGAGGCCGGAAAAGCCCTTACATCAATTT
CTGTTCCCAGTCGCCCCCAGAAGTAA

Upstream 100 bases:

>100_bases
GTTGAAATTATAAAAGAAGAACAACAGACAAAAAAATAATATTTTATGATTAAACTTTAAATTATTGCACAACATATTTA
TGAAAGGAGTTGAACCATAA

Downstream 100 bases:

>100_bases
TATTGATTAACCACAAACAAATTGACTTTTGTCATGAGTCATTAAAAAAGTAAACGACGTCCTCGATGACATTGTATTAA
AACCCAACATTTGACTATTA

Product: putative signal-transduction protein with CBS domains

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 141; Mature: 141

Protein sequence:

>141_residues
MKLKDIMTSDVTSINPNSSVKDAAQVMRSLNVGSVPVTDGNRPVGIITDRDITIRSVAQAGNINMPVHQVMTGDIVYGTP
DMSVEEAAQIMASKQIRRLPVVENGRLVGIVSLGDLAVRERSDIEAGKALTSISVPSRPQK

Sequences:

>Translated_141_residues
MKLKDIMTSDVTSINPNSSVKDAAQVMRSLNVGSVPVTDGNRPVGIITDRDITIRSVAQAGNINMPVHQVMTGDIVYGTP
DMSVEEAAQIMASKQIRRLPVVENGRLVGIVSLGDLAVRERSDIEAGKALTSISVPSRPQK
>Mature_141_residues
MKLKDIMTSDVTSINPNSSVKDAAQVMRSLNVGSVPVTDGNRPVGIITDRDITIRSVAQAGNINMPVHQVMTGDIVYGTP
DMSVEEAAQIMASKQIRRLPVVENGRLVGIVSLGDLAVRERSDIEAGKALTSISVPSRPQK

Specific function: Unknown

COG id: COG0517

COG function: function code R; FOG: CBS domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 2 CBS domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000644 [H]

Pfam domain/function: PF00571 CBS [H]

EC number: NA

Molecular weight: Translated: 15066; Mature: 15066

Theoretical pI: Translated: 9.14; Mature: 9.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLKDIMTSDVTSINPNSSVKDAAQVMRSLNVGSVPVTDGNRPVGIITDRDITIRSVAQA
CCCHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCEEECCCCCCEEEEECCCEEEEHHHHC
GNINMPVHQVMTGDIVYGTPDMSVEEAAQIMASKQIRRLPVVENGRLVGIVSLGDLAVRE
CCCCCCHHHHEECCEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCHHCC
RSDIEAGKALTSISVPSRPQK
CCCCCCCCEEEECCCCCCCCC
>Mature Secondary Structure
MKLKDIMTSDVTSINPNSSVKDAAQVMRSLNVGSVPVTDGNRPVGIITDRDITIRSVAQA
CCCHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCEEECCCCCCEEEEECCCEEEEHHHHC
GNINMPVHQVMTGDIVYGTPDMSVEEAAQIMASKQIRRLPVVENGRLVGIVSLGDLAVRE
CCCCCCHHHHEECCEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCHHCC
RSDIEAGKALTSISVPSRPQK
CCCCCCCCEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969498; 9384377 [H]