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The map label for this gene is abrB [H]

Identifier: 220931433

GI number: 220931433

Start: 642724

End: 642966

Strand: Reverse

Name: abrB [H]

Synonym: Hore_05890

Alternate gene names: 220931433

Gene position: 642966-642724 (Counterclockwise)

Preceding gene: 220931478

Following gene: 220931413

Centisome position: 24.94

GC content: 34.57

Gene sequence:

>243_bases
ATGAAATCGACAGGTATTGTTAGAAAGATTGATGATCTGGGGAGGATGGTTATTCCAATTGAGTTAAGGAGAACCATGAA
TATTGACAAAAAAGACCCGATGGAAATCTTTGTTGATGATGAAAAAATTATTTTAAAGAAATATGAACCGGCCTGTATTT
TCTGTGGAAATGCTGATGACACTGTTGAATTTAAAGGAAAGGTCATCTGTAAGAACTGCCTCAATGAAATGGCAGAAAAG
TAA

Upstream 100 bases:

>100_bases
ACTTAAAAAAGTTAGTTAAATATATTGACTCTATTTGGAATTAATAGTATAATTATCATAGATAATTTGTCGAAATTTGT
TATTAGGGAGGGAATTTTAA

Downstream 100 bases:

>100_bases
CATAAAGTAACATAAAGTAACATATGGTTACATAAAATTAGCACCCCAAAAAGGGTGCTAATTTTATTTCTTATTCAGTT
ATTTTAAAAATACATGATCC

Product: AbrB family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 80; Mature: 80

Protein sequence:

>80_residues
MKSTGIVRKIDDLGRMVIPIELRRTMNIDKKDPMEIFVDDEKIILKKYEPACIFCGNADDTVEFKGKVICKNCLNEMAEK

Sequences:

>Translated_80_residues
MKSTGIVRKIDDLGRMVIPIELRRTMNIDKKDPMEIFVDDEKIILKKYEPACIFCGNADDTVEFKGKVICKNCLNEMAEK
>Mature_80_residues
MKSTGIVRKIDDLGRMVIPIELRRTMNIDKKDPMEIFVDDEKIILKKYEPACIFCGNADDTVEFKGKVICKNCLNEMAEK

Specific function: Ambiactive repressor and activator of the transcription of genes expressed during the transition state between vegetative growth and the onset of stationary phase and sporulation. It controls the expression of genes spovG and tycA. AbrB binds to the tycA

COG id: COG2002

COG function: function code K; Regulators of stationary/sporulation gene expression

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis abh and spoVT [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006339
- InterPro:   IPR007159 [H]

Pfam domain/function: PF04014 SpoVT_AbrB [H]

EC number: NA

Molecular weight: Translated: 9210; Mature: 9210

Theoretical pI: Translated: 6.50; Mature: 6.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.0 %Cys     (Translated Protein)
6.2 %Met     (Translated Protein)
11.2 %Cys+Met (Translated Protein)
5.0 %Cys     (Mature Protein)
6.2 %Met     (Mature Protein)
11.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSTGIVRKIDDLGRMVIPIELRRTMNIDKKDPMEIFVDDEKIILKKYEPACIFCGNADD
CCCCCCEEEHHCCCCEEEEEEECCCCCCCCCCCEEEEECCCEEEEEECCCEEEEECCCCC
TVEFKGKVICKNCLNEMAEK
CEEECCEEHHHHHHHHHHCC
>Mature Secondary Structure
MKSTGIVRKIDDLGRMVIPIELRRTMNIDKKDPMEIFVDDEKIILKKYEPACIFCGNADD
CCCCCCEEEHHCCCCEEEEEEECCCCCCCCCCCEEEEECCCEEEEEECCCEEEEECCCCC
TVEFKGKVICKNCLNEMAEK
CEEECCEEHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3145384; 2554317; 7584024; 9384377; 2504584; 1908787 [H]