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The map label for this gene is tapC [H]

Identifier: 220931443

GI number: 220931443

Start: 651872

End: 653077

Strand: Direct

Name: tapC [H]

Synonym: Hore_05990

Alternate gene names: 220931443

Gene position: 651872-653077 (Clockwise)

Preceding gene: 220931442

Following gene: 220931444

Centisome position: 25.28

GC content: 42.79

Gene sequence:

>1206_bases
ATGGCACCGGAGTTTGAATATGAAGCGGTAAGTAAAAGTGGAGAACGAATTAAAGGTACTATTACAGCTGATAACTCGAC
AGTGGTTGCCAGGCAGCTCCGGGAAGAGGGCTATTATATAACTTCAATTGAAGAACAGGTAGAGAGAAAAGAAATTAATA
TTCAACTCAGTAACAGGGTTAAAACAAAGGACCTGGTATTGTTTACCCAGCAGTTTTCAGTATTGCTCAATGCCGGTATT
TCTCTGGTTGAAGCCCTGGATATTATGTATGACCAGGTTGAACACCCCCGTTTGAAGGAGGTTGTTCGCTCCATACAGGA
GGATGTGGAAACAGGTTCTTCCCTGACCGATGCCCTTTTAAAACACCCTGATGTGTTTCCGGAATTATACTGTCAGATGG
TTAAAGCCGGTGAAGCCGGTGGTGTGCTTGACCAGGTCCTGGAACAATTAAGTGCCCATTATGAGAGGCAGGATGAAATT
AATAGCAAGGTTAAGTCAGCCATGTATTATCCGGTGATTTTACTGGTGGTAGCGGTTGGTGTCGTTATTTTTCTCATGAC
CCGGGTTGTTCCCCAGTTTATCAGTCTCTTTTCATCTATGGACGTTGAGCTGCCATTACCGACCAGGATATTAATTAAAT
TAAGTACCTTTTTATCCTCATACTGGTGGGCCCTGTTTGGGGGGCTGGGATTGACTGTAGCCCTTTTATTAAAATATAAA
AGTACTCCCGAGGGAAGACGCCGGTTTGATAGTTTAATTCTCAAGATCCCTGTGTTCGGTAAGTTAATGCGGAAAATATA
TGTATCCCGTTTTACCAATACCCTGTCTATCCTGTTAACAAGTGGGATAGACATTATATCAGCCCTTGCTATTGTCGAAG
AGGTGGTGGGAAATAAGGTTTTTTCAGATGTGATTTCCCGCTCCCGCACCCAGGTAAGTGAAGGGATATCCCTTTCCCGG
CCTCTTGATGAGAGTGGGGAGTTTCCCCGGATGGTTATTCAGATGATCAATGTTGGCGAGGAAGCAGGTTCCCTGGATAA
TATGCTGCAGAAGGTTTCAGATTTTTATGATAAAGAAGTGGAAACCAGTATCAACAATACTGTTTCCCTTATTGAACCCC
TTATGATAGTGGTTCTGGCGGTTATCGTTGGGTTTATTGTAATGTCCATTATATTACCCATGTTTGAAATGTATGAACAA
TTTTAG

Upstream 100 bases:

>100_bases
TTGTTCTTCCCATAATTGATTTTTCTAGTCGTCAAACTTATAAATTTTGTTAATTATGAAAAGCCAATAAACTAAAAGGG
AGCAGGGGGTGAGATTTACC

Downstream 100 bases:

>100_bases
GGAAAAAGATTATATAGGTGTTTCAATTACAATAACTTAACTGCTATAATTAAAATTTTTATGAAATAACAAAATTTTAA
ATTTCGATAGAGGAGGTGAG

Product: Tfp pilus biogenesis protein PilC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 401; Mature: 400

Protein sequence:

>401_residues
MAPEFEYEAVSKSGERIKGTITADNSTVVARQLREEGYYITSIEEQVERKEINIQLSNRVKTKDLVLFTQQFSVLLNAGI
SLVEALDIMYDQVEHPRLKEVVRSIQEDVETGSSLTDALLKHPDVFPELYCQMVKAGEAGGVLDQVLEQLSAHYERQDEI
NSKVKSAMYYPVILLVVAVGVVIFLMTRVVPQFISLFSSMDVELPLPTRILIKLSTFLSSYWWALFGGLGLTVALLLKYK
STPEGRRRFDSLILKIPVFGKLMRKIYVSRFTNTLSILLTSGIDIISALAIVEEVVGNKVFSDVISRSRTQVSEGISLSR
PLDESGEFPRMVIQMINVGEEAGSLDNMLQKVSDFYDKEVETSINNTVSLIEPLMIVVLAVIVGFIVMSIILPMFEMYEQ
F

Sequences:

>Translated_401_residues
MAPEFEYEAVSKSGERIKGTITADNSTVVARQLREEGYYITSIEEQVERKEINIQLSNRVKTKDLVLFTQQFSVLLNAGI
SLVEALDIMYDQVEHPRLKEVVRSIQEDVETGSSLTDALLKHPDVFPELYCQMVKAGEAGGVLDQVLEQLSAHYERQDEI
NSKVKSAMYYPVILLVVAVGVVIFLMTRVVPQFISLFSSMDVELPLPTRILIKLSTFLSSYWWALFGGLGLTVALLLKYK
STPEGRRRFDSLILKIPVFGKLMRKIYVSRFTNTLSILLTSGIDIISALAIVEEVVGNKVFSDVISRSRTQVSEGISLSR
PLDESGEFPRMVIQMINVGEEAGSLDNMLQKVSDFYDKEVETSINNTVSLIEPLMIVVLAVIVGFIVMSIILPMFEMYEQ
F
>Mature_400_residues
APEFEYEAVSKSGERIKGTITADNSTVVARQLREEGYYITSIEEQVERKEINIQLSNRVKTKDLVLFTQQFSVLLNAGIS
LVEALDIMYDQVEHPRLKEVVRSIQEDVETGSSLTDALLKHPDVFPELYCQMVKAGEAGGVLDQVLEQLSAHYERQDEIN
SKVKSAMYYPVILLVVAVGVVIFLMTRVVPQFISLFSSMDVELPLPTRILIKLSTFLSSYWWALFGGLGLTVALLLKYKS
TPEGRRRFDSLILKIPVFGKLMRKIYVSRFTNTLSILLTSGIDIISALAIVEEVVGNKVFSDVISRSRTQVSEGISLSRP
LDESGEFPRMVIQMINVGEEAGSLDNMLQKVSDFYDKEVETSINNTVSLIEPLMIVVLAVIVGFIVMSIILPMFEMYEQF

Specific function: Involved in the translocation of the type IV pilin [H]

COG id: COG1459

COG function: function code NU; Type II secretory pathway, component PulF

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP F family [H]

Homologues:

Organism=Escherichia coli, GI1789724, Length=395, Percent_Identity=31.3924050632911, Blast_Score=218, Evalue=7e-58,
Organism=Escherichia coli, GI1786295, Length=397, Percent_Identity=26.9521410579345, Blast_Score=167, Evalue=1e-42,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003004
- InterPro:   IPR018076
- InterPro:   IPR001992 [H]

Pfam domain/function: PF00482 GSPII_F [H]

EC number: NA

Molecular weight: Translated: 45061; Mature: 44930

Theoretical pI: Translated: 4.65; Mature: 4.65

Prosite motif: PS00874 T2SP_F

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAPEFEYEAVSKSGERIKGTITADNSTVVARQLREEGYYITSIEEQVERKEINIQLSNRV
CCCCCCHHHHHCCCCEEEEEEECCCHHHHHHHHHHCCCEEEHHHHHHHHHHHCEEECCCC
KTKDLVLFTQQFSVLLNAGISLVEALDIMYDQVEHPRLKEVVRSIQEDVETGSSLTDALL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHH
KHPDVFPELYCQMVKAGEAGGVLDQVLEQLSAHYERQDEINSKVKSAMYYPVILLVVAVG
HCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VVIFLMTRVVPQFISLFSSMDVELPLPTRILIKLSTFLSSYWWALFGGLGLTVALLLKYK
HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
STPEGRRRFDSLILKIPVFGKLMRKIYVSRFTNTLSILLTSGIDIISALAIVEEVVGNKV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FSDVISRSRTQVSEGISLSRPLDESGEFPRMVIQMINVGEEAGSLDNMLQKVSDFYDKEV
HHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHH
ETSINNTVSLIEPLMIVVLAVIVGFIVMSIILPMFEMYEQF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
APEFEYEAVSKSGERIKGTITADNSTVVARQLREEGYYITSIEEQVERKEINIQLSNRV
CCCCCHHHHHCCCCEEEEEEECCCHHHHHHHHHHCCCEEEHHHHHHHHHHHCEEECCCC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HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8820654 [H]