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The map label for this gene is ycjO [C]

Identifier: 220931304

GI number: 220931304

Start: 492211

End: 493095

Strand: Direct

Name: ycjO [C]

Synonym: Hore_04590

Alternate gene names: 220931304

Gene position: 492211-493095 (Clockwise)

Preceding gene: 220931303

Following gene: 220931305

Centisome position: 19.09

GC content: 38.42

Gene sequence:

>885_bases
GTGTATGAAAGTAGAACTGTAGGACAAAAAAAATTGGAACAGCTAAAACTACTTTTACCAGCACTAATTCCAGTCATATT
ATTTTCCTTAATCCCATTACTCAGGGGAATTTATCTGGGGTTTACTGATTATGTGCTGGGGTCAGATGTAAGTTTTAATG
GTTTTGAAAATTACAAATATATGTTGACTGATACATATTTCTGGCAGTCTTTTAAAATAGGTTTTGTCTGGACAATAGCC
GTAACAGCCGGGCAGATATTACTGGGGTTAGGTCTGGCCATGCTTTTAAACGGGGATGTGTTGTTCAGGTCCTGGGCCCG
GGTACTTATACTTATTCCCTGGGCAATGCCGCCGGTTATCAGGGGTATTATGTGGAAATTCATGTATCACCCTGATACTG
GAGCTATAAATTATTTTTTAATGAAATTAAATATAATTGACCAGCCTATAGATTTTCTTTTTAGTTTTGATTATGTAATT
CCGGCTGTAATTATTGTTGGTATCTGGGGAGGTTTACCACAGGCAGCCATTACCTTACTTGCTGGTTTACAATCAATTTC
AGATGATTATTATGAAGCAGCGTGTCTTGATGGGGCAAATGGCTGGCATACATTTCGGTATATAACCTTACCACTGTTAA
GCCCAGTTATGACAGCAATAACAATTCTGAGATTTATTTGGAATTTTAATTCATTTGGATTGGTTTATGTACTTACCCAG
GGAGGCCCAGCGGGTATGACCAGGATTCCAACCCTGTTGGCCTATGAAGAAGGATTCAGGTATGGTAATGTTGGTTATGC
TGCAGCTCTGGGAAACGTAATGGTACTTGTAGTAGCAGTACTGATGTTTATGTATCTCAAAAGAAGAATGAGTAAGGAAG
TTTAA

Upstream 100 bases:

>100_bases
GTAACAAAACTGGGAGCCCAGAGCTCACTTCCTACATATCAAGAAGTTATGAAATTTGCGAAACATATAAAAAAAAATAT
ATAGGTGAGGTGTCAAAACG

Downstream 100 bases:

>100_bases
TAAGGGGGTGAAACAATATGAATCTAAATATTATTAAAAAAATTGGGAAGAATTTGATATTATTATGTTATTTAATATTT
TTAGCATTTCCACTTTTCTG

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 294

Protein sequence:

>294_residues
MYESRTVGQKKLEQLKLLLPALIPVILFSLIPLLRGIYLGFTDYVLGSDVSFNGFENYKYMLTDTYFWQSFKIGFVWTIA
VTAGQILLGLGLAMLLNGDVLFRSWARVLILIPWAMPPVIRGIMWKFMYHPDTGAINYFLMKLNIIDQPIDFLFSFDYVI
PAVIIVGIWGGLPQAAITLLAGLQSISDDYYEAACLDGANGWHTFRYITLPLLSPVMTAITILRFIWNFNSFGLVYVLTQ
GGPAGMTRIPTLLAYEEGFRYGNVGYAAALGNVMVLVVAVLMFMYLKRRMSKEV

Sequences:

>Translated_294_residues
MYESRTVGQKKLEQLKLLLPALIPVILFSLIPLLRGIYLGFTDYVLGSDVSFNGFENYKYMLTDTYFWQSFKIGFVWTIA
VTAGQILLGLGLAMLLNGDVLFRSWARVLILIPWAMPPVIRGIMWKFMYHPDTGAINYFLMKLNIIDQPIDFLFSFDYVI
PAVIIVGIWGGLPQAAITLLAGLQSISDDYYEAACLDGANGWHTFRYITLPLLSPVMTAITILRFIWNFNSFGLVYVLTQ
GGPAGMTRIPTLLAYEEGFRYGNVGYAAALGNVMVLVVAVLMFMYLKRRMSKEV
>Mature_294_residues
MYESRTVGQKKLEQLKLLLPALIPVILFSLIPLLRGIYLGFTDYVLGSDVSFNGFENYKYMLTDTYFWQSFKIGFVWTIA
VTAGQILLGLGLAMLLNGDVLFRSWARVLILIPWAMPPVIRGIMWKFMYHPDTGAINYFLMKLNIIDQPIDFLFSFDYVI
PAVIIVGIWGGLPQAAITLLAGLQSISDDYYEAACLDGANGWHTFRYITLPLLSPVMTAITILRFIWNFNSFGLVYVLTQ
GGPAGMTRIPTLLAYEEGFRYGNVGYAAALGNVMVLVVAVLMFMYLKRRMSKEV

Specific function: Probably part of an ABC transporter complex. Probably responsible for the translocation of the substrate across the membrane (Probable) [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787570, Length=260, Percent_Identity=31.9230769230769, Blast_Score=130, Evalue=7e-32,
Organism=Escherichia coli, GI1790465, Length=255, Percent_Identity=32.5490196078431, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI1789861, Length=302, Percent_Identity=25.8278145695364, Blast_Score=89, Evalue=4e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33142; Mature: 33142

Theoretical pI: Translated: 8.74; Mature: 8.74

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYESRTVGQKKLEQLKLLLPALIPVILFSLIPLLRGIYLGFTDYVLGSDVSFNGFENYKY
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEE
MLTDTYFWQSFKIGFVWTIAVTAGQILLGLGLAMLLNGDVLFRSWARVLILIPWAMPPVI
EEEEHHHHHHEEEEEEEEEHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHEECCCCCHHHH
RGIMWKFMYHPDTGAINYFLMKLNIIDQPIDFLFSFDYVIPAVIIVGIWGGLPQAAITLL
HHHHHHHHCCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
AGLQSISDDYYEAACLDGANGWHTFRYITLPLLSPVMTAITILRFIWNFNSFGLVYVLTQ
HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEC
GGPAGMTRIPTLLAYEEGFRYGNVGYAAALGNVMVLVVAVLMFMYLKRRMSKEV
CCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MYESRTVGQKKLEQLKLLLPALIPVILFSLIPLLRGIYLGFTDYVLGSDVSFNGFENYKY
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEE
MLTDTYFWQSFKIGFVWTIAVTAGQILLGLGLAMLLNGDVLFRSWARVLILIPWAMPPVI
EEEEHHHHHHEEEEEEEEEHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHEECCCCCHHHH
RGIMWKFMYHPDTGAINYFLMKLNIIDQPIDFLFSFDYVIPAVIIVGIWGGLPQAAITLL
HHHHHHHHCCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
AGLQSISDDYYEAACLDGANGWHTFRYITLPLLSPVMTAITILRFIWNFNSFGLVYVLTQ
HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEC
GGPAGMTRIPTLLAYEEGFRYGNVGYAAALGNVMVLVVAVLMFMYLKRRMSKEV
CCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA