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The map label for this gene is araQ [H]

Identifier: 220931274

GI number: 220931274

Start: 461211

End: 462104

Strand: Direct

Name: araQ [H]

Synonym: Hore_04290

Alternate gene names: 220931274

Gene position: 461211-462104 (Clockwise)

Preceding gene: 220931273

Following gene: 220931275

Centisome position: 17.89

GC content: 38.7

Gene sequence:

>894_bases
GTGGAGTTACAGTTAAATAAGAAAGAAAATATCACCAAAGAAAATGTTACCATAGATAAGAAGCAAAAGGACTGGGTTAA
GGTCCTCAAAAAAGCACTTCTTTATTTTATTTTGATTTTCGGGGTGTTAATTACATTTTTCCCATTTTATTATATGATAG
TCCTGGCAACCCGTAGTGTTGAAGAAATTTTTAATTTTCCACCCCCCCTCTGGTTTGGTAATGCTGCTCAGGAGAACATA
CAGATTTTGCTGGATAAGCTGCCATTTTTCCAGAATATCTTTAATTCAATCATTGTTGCCACTCTGGCTACCTTACTGGT
ATTGTTTTTCTGTTCCCTCGGGGGGTATGGTTTTGCTAAATATAACTTCAGGGGAAAAGAAAAATTATTCTTTCTTATGT
TAGCCAGTATGATGATTCCACCATTATTATCAATTATACCCTGGTTTATTATGATGAAAGCCTTTGGCTGGATCAATAGC
TTTAAACCATTAATTATACCAGGGGCTGCCAATGCCTTTGGTATTTTCTTGATGAGGCAGTTTATGGAAGAAATACCTGA
TGAGATTATTGATGCAGCCAGGATTGATGGTGCCGGGGAGTTTGAAATTTATTATAAAATTGCCCTACCTTTAAGCAAAC
CAGGGATGGCTACTTTAGGTATCCTGACTTTCCTGGGTTCCTGGAATAACTTTATGGGCCCCCTGCTTGTACTCCAGGAA
AAAACAAAATACACCATACCTGTTGCCCTCTCAAAGCTAAATGGTAACTTTGAAACTCCCTGGGGAGCAACGATGATGGG
TACTGCTCTCGGGGTTTTCCCGATAGTACTGGCCTTTGTTCTGGCATCTAAATATTTTATTTCTGGTTTAACGACAGGTG
CTACCAAGGGATAA

Upstream 100 bases:

>100_bases
TGGAACAGGTAGTGCAATGGCTTATATTCTTTGTATCTTTATTATTATTCTATCTTTAATAAATATGAAAATATTTCAGA
AAAGATAAGGGGGGAACAAT

Downstream 100 bases:

>100_bases
TTTAATTGGTTGGTCAGGTTGGCAGAAACAATGGGTTTGTGATTAAAGTTGGCAAAAAGGGAGGCCCGGGGGGCGGTCTC
CCTATTCAGGTATCTTCTTT

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 297

Protein sequence:

>297_residues
MELQLNKKENITKENVTIDKKQKDWVKVLKKALLYFILIFGVLITFFPFYYMIVLATRSVEEIFNFPPPLWFGNAAQENI
QILLDKLPFFQNIFNSIIVATLATLLVLFFCSLGGYGFAKYNFRGKEKLFFLMLASMMIPPLLSIIPWFIMMKAFGWINS
FKPLIIPGAANAFGIFLMRQFMEEIPDEIIDAARIDGAGEFEIYYKIALPLSKPGMATLGILTFLGSWNNFMGPLLVLQE
KTKYTIPVALSKLNGNFETPWGATMMGTALGVFPIVLAFVLASKYFISGLTTGATKG

Sequences:

>Translated_297_residues
MELQLNKKENITKENVTIDKKQKDWVKVLKKALLYFILIFGVLITFFPFYYMIVLATRSVEEIFNFPPPLWFGNAAQENI
QILLDKLPFFQNIFNSIIVATLATLLVLFFCSLGGYGFAKYNFRGKEKLFFLMLASMMIPPLLSIIPWFIMMKAFGWINS
FKPLIIPGAANAFGIFLMRQFMEEIPDEIIDAARIDGAGEFEIYYKIALPLSKPGMATLGILTFLGSWNNFMGPLLVLQE
KTKYTIPVALSKLNGNFETPWGATMMGTALGVFPIVLAFVLASKYFISGLTTGATKG
>Mature_297_residues
MELQLNKKENITKENVTIDKKQKDWVKVLKKALLYFILIFGVLITFFPFYYMIVLATRSVEEIFNFPPPLWFGNAAQENI
QILLDKLPFFQNIFNSIIVATLATLLVLFFCSLGGYGFAKYNFRGKEKLFFLMLASMMIPPLLSIIPWFIMMKAFGWINS
FKPLIIPGAANAFGIFLMRQFMEEIPDEIIDAARIDGAGEFEIYYKIALPLSKPGMATLGILTFLGSWNNFMGPLLVLQE
KTKYTIPVALSKLNGNFETPWGATMMGTALGVFPIVLAFVLASKYFISGLTTGATKG

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789860, Length=278, Percent_Identity=26.978417266187, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1787571, Length=275, Percent_Identity=25.4545454545455, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI1790464, Length=228, Percent_Identity=25.8771929824561, Blast_Score=84, Evalue=8e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33480; Mature: 33480

Theoretical pI: Translated: 9.69; Mature: 9.69

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELQLNKKENITKENVTIDKKQKDWVKVLKKALLYFILIFGVLITFFPFYYMIVLATRSV
CCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EEIFNFPPPLWFGNAAQENIQILLDKLPFFQNIFNSIIVATLATLLVLFFCSLGGYGFAK
HHHHCCCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
YNFRGKEKLFFLMLASMMIPPLLSIIPWFIMMKAFGWINSFKPLIIPGAANAFGIFLMRQ
ECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHH
FMEEIPDEIIDAARIDGAGEFEIYYKIALPLSKPGMATLGILTFLGSWNNFMGPLLVLQE
HHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCHHHHHCHHHEEEC
KTKYTIPVALSKLNGNFETPWGATMMGTALGVFPIVLAFVLASKYFISGLTTGATKG
CCCEEHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MELQLNKKENITKENVTIDKKQKDWVKVLKKALLYFILIFGVLITFFPFYYMIVLATRSV
CCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EEIFNFPPPLWFGNAAQENIQILLDKLPFFQNIFNSIIVATLATLLVLFFCSLGGYGFAK
HHHHCCCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
YNFRGKEKLFFLMLASMMIPPLLSIIPWFIMMKAFGWINSFKPLIIPGAANAFGIFLMRQ
ECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHH
FMEEIPDEIIDAARIDGAGEFEIYYKIALPLSKPGMATLGILTFLGSWNNFMGPLLVLQE
HHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCHHHHHCHHHEEEC
KTKYTIPVALSKLNGNFETPWGATMMGTALGVFPIVLAFVLASKYFISGLTTGATKG
CCCEEHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9084180; 8969504; 9384377; 10417639 [H]