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The map label for this gene is araN [H]

Identifier: 220931272

GI number: 220931272

Start: 458982

End: 460238

Strand: Direct

Name: araN [H]

Synonym: Hore_04270

Alternate gene names: 220931272

Gene position: 458982-460238 (Clockwise)

Preceding gene: 220931271

Following gene: 220931273

Centisome position: 17.8

GC content: 43.44

Gene sequence:

>1257_bases
ATGAAGAAGTTTGCCGTGATTGCTGTAGTGGCTCTGCTGGTAGTTTCAATGTTCAGTCTTTCTATAGCTGCCAAGACAAA
GATTAAGGTGGCCTGTTTCCCTGATCAGGACTCTGGCTTTGAAGCAATTTTAGATCAATTCCATGCTGAACATCCTGATA
TTGAGGTAGAGCTGGTAGTTAATGGTTTTGCCGATCACCACAACACTCTGCTTACCCAGATTGCTGCCGGGGCAGAGGTA
CCTGATGTTGCCATGATTGAAATTGGGTATATTGCCAACTTTGTCTCCAAAGGTGGTTTTGTAAATCTCCTCGAAGAACC
ATATAACGCTGGCCAGTTTAAGGAAAATATCGTTCCCTATAAATGGGCACAGGGAAGTACTGATGACGGCCGCTTAATTG
CTTTTCCAACTGATATTGCACCGGGTACAATTTATTATCGCAGGGATAAACTGGCTGAACTTGGCTATGAAATTGAAGAT
ATGAAGACTTTAGAAGACTGGATTGAAGCCGGTTCTCAATTTGCTAAAGACTTAGATGGTGACGGTGTCAATGATCGCTG
GTTACTGGCTGACGCTACTGATATTTTCTTTATGATTGCTAAAAGTGGTGAAGAACTTTACTTTAATGAAGACGGTGAGT
GTATAGTTGATTCCCCAAGGTTTATCAAGGCCTTTAAGGCTGCCAAGATGGTCAGGGATATGGGACTCGATGCCAGGATA
GGTGCCTGGACCAATGAATGGTATTCTACCTTTAAAGATGGTACAGTCTTAATGCAACCTTCAGGAGCATGGCTTGGTGG
CCATATCCGTAACTGGATTGCTCCTGACACAGCAGGCAAATGGGGTGTAACCAACCTCCCGGATGGAATGTACTGTAACT
GGGGTGGATCCTTTGCAGCTATACCGGAGAAAGCTGAACATAAGGAAGAAGCCTGGGAATTTATTAAATTTATTGCCACC
AGAAAGGATACCCAGATTGCCCAGTTTAAAGCTTCAAATATCTTCCCGGCCTGGATGCCTGCCTTTGATGACCCGGTCTT
TCAGGAAGAAATGGAATTCTATGGTGGACAGAAGGCCCGTTTACTCTGGCTTGAAGCAGCCAAGAAGATTCCTAATGTTG
TAACCAATAAATATGATGTTATTGCTGAAGAGATTGTTACTGCAGCCCTGACAGATGTACTTAATAATGATGCTGATCCT
GTAGAAGCACTCAGGGAAGCTAAAAGAATGATTGAAAGAAGGATGAGAAGAAGGTAA

Upstream 100 bases:

>100_bases
CTGAAAATAGACCTTAAAGGAGGTGGTGAAACAACTACATTAAGATACAGGGGTTAAGTATTATATAAAAAAGCTAATTT
TTTAAAGGGGGAATATATTA

Downstream 100 bases:

>100_bases
ACATTAAATATGGGGGTGGGGTATCCCACCCCTTTAATAAGGAGGGTTAACATGAGACTAAGTAAAAAAGTAGCACCATA
TGTGTTTATTTCACCGTTCT

Product: family 1 extracellular solute-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 418; Mature: 418

Protein sequence:

>418_residues
MKKFAVIAVVALLVVSMFSLSIAAKTKIKVACFPDQDSGFEAILDQFHAEHPDIEVELVVNGFADHHNTLLTQIAAGAEV
PDVAMIEIGYIANFVSKGGFVNLLEEPYNAGQFKENIVPYKWAQGSTDDGRLIAFPTDIAPGTIYYRRDKLAELGYEIED
MKTLEDWIEAGSQFAKDLDGDGVNDRWLLADATDIFFMIAKSGEELYFNEDGECIVDSPRFIKAFKAAKMVRDMGLDARI
GAWTNEWYSTFKDGTVLMQPSGAWLGGHIRNWIAPDTAGKWGVTNLPDGMYCNWGGSFAAIPEKAEHKEEAWEFIKFIAT
RKDTQIAQFKASNIFPAWMPAFDDPVFQEEMEFYGGQKARLLWLEAAKKIPNVVTNKYDVIAEEIVTAALTDVLNNDADP
VEALREAKRMIERRMRRR

Sequences:

>Translated_418_residues
MKKFAVIAVVALLVVSMFSLSIAAKTKIKVACFPDQDSGFEAILDQFHAEHPDIEVELVVNGFADHHNTLLTQIAAGAEV
PDVAMIEIGYIANFVSKGGFVNLLEEPYNAGQFKENIVPYKWAQGSTDDGRLIAFPTDIAPGTIYYRRDKLAELGYEIED
MKTLEDWIEAGSQFAKDLDGDGVNDRWLLADATDIFFMIAKSGEELYFNEDGECIVDSPRFIKAFKAAKMVRDMGLDARI
GAWTNEWYSTFKDGTVLMQPSGAWLGGHIRNWIAPDTAGKWGVTNLPDGMYCNWGGSFAAIPEKAEHKEEAWEFIKFIAT
RKDTQIAQFKASNIFPAWMPAFDDPVFQEEMEFYGGQKARLLWLEAAKKIPNVVTNKYDVIAEEIVTAALTDVLNNDADP
VEALREAKRMIERRMRRR
>Mature_418_residues
MKKFAVIAVVALLVVSMFSLSIAAKTKIKVACFPDQDSGFEAILDQFHAEHPDIEVELVVNGFADHHNTLLTQIAAGAEV
PDVAMIEIGYIANFVSKGGFVNLLEEPYNAGQFKENIVPYKWAQGSTDDGRLIAFPTDIAPGTIYYRRDKLAELGYEIED
MKTLEDWIEAGSQFAKDLDGDGVNDRWLLADATDIFFMIAKSGEELYFNEDGECIVDSPRFIKAFKAAKMVRDMGLDARI
GAWTNEWYSTFKDGTVLMQPSGAWLGGHIRNWIAPDTAGKWGVTNLPDGMYCNWGGSFAAIPEKAEHKEEAWEFIKFIAT
RKDTQIAQFKASNIFPAWMPAFDDPVFQEEMEFYGGQKARLLWLEAAKKIPNVVTNKYDVIAEEIVTAALTDVLNNDADP
VEALREAKRMIERRMRRR

Specific function: Part of the binding-protein-dependent transport system for L-arabinose [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 46926; Mature: 46926

Theoretical pI: Translated: 4.53; Mature: 4.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKFAVIAVVALLVVSMFSLSIAAKTKIKVACFPDQDSGFEAILDQFHAEHPDIEVELVV
CCHHHHHHHHHHHHHHHHHHHHEECCEEEEEEECCCCCCHHHHHHHHCCCCCCEEEEEEE
NGFADHHNTLLTQIAAGAEVPDVAMIEIGYIANFVSKGGFVNLLEEPYNAGQFKENIVPY
ECCHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHCCCEEEHHHCCCCCCCHHHCCCCE
KWAQGSTDDGRLIAFPTDIAPGTIYYRRDKLAELGYEIEDMKTLEDWIEAGSQFAKDLDG
EECCCCCCCCEEEEEECCCCCCEEEEEHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCC
DGVNDRWLLADATDIFFMIAKSGEELYFNEDGECIVDSPRFIKAFKAAKMVRDMGLDARI
CCCCCCEEEEECCEEEEEEECCCCEEEECCCCCEEECCHHHHHHHHHHHHHHHCCCCCCC
GAWTNEWYSTFKDGTVLMQPSGAWLGGHIRNWIAPDTAGKWGVTNLPDGMYCNWGGSFAA
CCCHHHHHHHHCCCEEEECCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCEECCCCCEEE
IPEKAEHKEEAWEFIKFIATRKDTQIAQFKASNIFPAWMPAFDDPVFQEEMEFYGGQKAR
CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCEE
LLWLEAAKKIPNVVTNKYDVIAEEIVTAALTDVLNNDADPVEALREAKRMIERRMRRR
EHHHHHHHHCHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKKFAVIAVVALLVVSMFSLSIAAKTKIKVACFPDQDSGFEAILDQFHAEHPDIEVELVV
CCHHHHHHHHHHHHHHHHHHHHEECCEEEEEEECCCCCCHHHHHHHHCCCCCCEEEEEEE
NGFADHHNTLLTQIAAGAEVPDVAMIEIGYIANFVSKGGFVNLLEEPYNAGQFKENIVPY
ECCHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHCCCEEEHHHCCCCCCCHHHCCCCE
KWAQGSTDDGRLIAFPTDIAPGTIYYRRDKLAELGYEIEDMKTLEDWIEAGSQFAKDLDG
EECCCCCCCCEEEEEECCCCCCEEEEEHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCC
DGVNDRWLLADATDIFFMIAKSGEELYFNEDGECIVDSPRFIKAFKAAKMVRDMGLDARI
CCCCCCEEEEECCEEEEEEECCCCEEEECCCCCEEECCHHHHHHHHHHHHHHHCCCCCCC
GAWTNEWYSTFKDGTVLMQPSGAWLGGHIRNWIAPDTAGKWGVTNLPDGMYCNWGGSFAA
CCCHHHHHHHHCCCEEEECCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCEECCCCCEEE
IPEKAEHKEEAWEFIKFIATRKDTQIAQFKASNIFPAWMPAFDDPVFQEEMEFYGGQKAR
CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCEE
LLWLEAAKKIPNVVTNKYDVIAEEIVTAALTDVLNNDADPVEALREAKRMIERRMRRR
EHHHHHHHHCHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]