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The map label for this gene is 220931225

Identifier: 220931225

GI number: 220931225

Start: 391235

End: 391909

Strand: Direct

Name: 220931225

Synonym: Hore_03780

Alternate gene names: NA

Gene position: 391235-391909 (Clockwise)

Preceding gene: 220931224

Following gene: 220931226

Centisome position: 15.18

GC content: 34.07

Gene sequence:

>675_bases
ATGAACTCCTACTTTAAAAATCTCTGGATTTTGTATCTTAAGGACTTAAAATGTGAATTTAGAAGCATAGATAACATGGC
TTCGACAATTGTGTTTGGATTAATGGTTACCTTTATCATCAGTCTTTCCCTGCAAAACCTCGATATGGAGTCTATTAATA
TCTTTCCTTCACTACTTTGGGTCGTTGTTCTGTTTACGGTAACCCTGGGTGTAAACCGGTCATTTGATTTTGAAAAGGAG
AATAAAGCCCATGAAGCATTAATAATGGCTGTAGGTGACTGGAGCTGTATATTCTTTGCCAAGGTTATAAGTAACTTAAC
CCTGTTATTTGTTGTAGAAGCAATTATAATACCGCTGTACATAATATTTAACGATATCAGGTTTGACTTCAATTACGGAT
TCTTTTTATTAACATTAATTCTCGGGAGCTGTGGCTTGTCTCTGATAGGAACCCTGTTAAATTCAATTATTTTACAGATT
AGAGGCTCCAAGCTTTTATTACCTGTGTTGCTTTTTCCACTATCCATTCCCCTTTTTATTGCTGTAACTGAATGTACCAA
AGCCTCACTTATAGCAGGTTATATTCCAGTACGGTGGGTTAATTTTCTGATTCTCTTTGATTTAATACATTTTTTGATAC
CATTATTTATCTTTGATTATATCATGGAAAACTAA

Upstream 100 bases:

>100_bases
TACAGGTCCTTGTCACCCATAAATCTGCTTTTCTGACCGGAATTAACTATAGAAAGTATAGACTTGAAAGGGGAGAACTG
GTTGAAGGTGGGGACAACAT

Downstream 100 bases:

>100_bases
ATGGGGGTAAAGCCATGAAGGATAAGGTTAATTCTATACTTCTGATTATACTTATTTTCACAATGTTAACCAACCTGTAT
CTTATATTTTACTATGCCCC

Product: cytochrome c-type biogenesis protein CcmB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 224; Mature: 224

Protein sequence:

>224_residues
MNSYFKNLWILYLKDLKCEFRSIDNMASTIVFGLMVTFIISLSLQNLDMESINIFPSLLWVVVLFTVTLGVNRSFDFEKE
NKAHEALIMAVGDWSCIFFAKVISNLTLLFVVEAIIIPLYIIFNDIRFDFNYGFFLLTLILGSCGLSLIGTLLNSIILQI
RGSKLLLPVLLFPLSIPLFIAVTECTKASLIAGYIPVRWVNFLILFDLIHFLIPLFIFDYIMEN

Sequences:

>Translated_224_residues
MNSYFKNLWILYLKDLKCEFRSIDNMASTIVFGLMVTFIISLSLQNLDMESINIFPSLLWVVVLFTVTLGVNRSFDFEKE
NKAHEALIMAVGDWSCIFFAKVISNLTLLFVVEAIIIPLYIIFNDIRFDFNYGFFLLTLILGSCGLSLIGTLLNSIILQI
RGSKLLLPVLLFPLSIPLFIAVTECTKASLIAGYIPVRWVNFLILFDLIHFLIPLFIFDYIMEN
>Mature_224_residues
MNSYFKNLWILYLKDLKCEFRSIDNMASTIVFGLMVTFIISLSLQNLDMESINIFPSLLWVVVLFTVTLGVNRSFDFEKE
NKAHEALIMAVGDWSCIFFAKVISNLTLLFVVEAIIIPLYIIFNDIRFDFNYGFFLLTLILGSCGLSLIGTLLNSIILQI
RGSKLLLPVLLFPLSIPLFIAVTECTKASLIAGYIPVRWVNFLILFDLIHFLIPLFIFDYIMEN

Specific function: Unknown

COG id: COG2386

COG function: function code O; ABC-type transport system involved in cytochrome c biogenesis, permease component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25647; Mature: 25647

Theoretical pI: Translated: 4.88; Mature: 4.88

Prosite motif: PS00211 ABC_TRANSPORTER_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSYFKNLWILYLKDLKCEFRSIDNMASTIVFGLMVTFIISLSLQNLDMESINIFPSLLW
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
VVVLFTVTLGVNRSFDFEKENKAHEALIMAVGDWSCIFFAKVISNLTLLFVVEAIIIPLY
HHHHHHHHHCCCCCCCCCHHCCHHHHHEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHH
IIFNDIRFDFNYGFFLLTLILGSCGLSLIGTLLNSIILQIRGSKLLLPVLLFPLSIPLFI
HHHHHHHEECCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
AVTECTKASLIAGYIPVRWVNFLILFDLIHFLIPLFIFDYIMEN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNSYFKNLWILYLKDLKCEFRSIDNMASTIVFGLMVTFIISLSLQNLDMESINIFPSLLW
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
VVVLFTVTLGVNRSFDFEKENKAHEALIMAVGDWSCIFFAKVISNLTLLFVVEAIIIPLY
HHHHHHHHHCCCCCCCCCHHCCHHHHHEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHH
IIFNDIRFDFNYGFFLLTLILGSCGLSLIGTLLNSIILQIRGSKLLLPVLLFPLSIPLFI
HHHHHHHEECCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
AVTECTKASLIAGYIPVRWVNFLILFDLIHFLIPLFIFDYIMEN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA