| Definition | Halothermothrix orenii H 168 chromosome, complete genome. |
|---|---|
| Accession | NC_011899 |
| Length | 2,578,146 |
Click here to switch to the map view.
The map label for this gene is 220931217
Identifier: 220931217
GI number: 220931217
Start: 383519
End: 384520
Strand: Reverse
Name: 220931217
Synonym: Hore_03700
Alternate gene names: NA
Gene position: 384520-383519 (Counterclockwise)
Preceding gene: 220931218
Following gene: 220931213
Centisome position: 14.91
GC content: 39.12
Gene sequence:
>1002_bases ATGTTTAAGAAAATAATAAACCTGATTAAAAAAGATTTAATAAATGGCCTCAGAAATAACATGGTTATTTATATGTTATT ATTTCCTCTGGTGCTGGCCCTGGGGATGAGTTTTTTCATTCCCAGTGTCACCGAAGTAGAGGTTACCATTGCCGTTGACT CCGGTGTTGACCAGTGGGTTATCAACCGCTTAGAAGATTATGGAAAGGTAGAACTATATGATTCACCTGAGGCGGTAAAA GAAAGGGTGAAAAGGCTTGATGACATCTCTGGCATTATTAAAGATGAAGATGAGTATGTGGTTTTAATTGAAGGCAATGA ACCAGAAGAAACGGTTGATATGGCCAGGGCTGTCATGAACATGGTTTTATCTGATGAACAGCCTGCCGATTTTAAATATA AAAGCCTGAACAAGGAAACTTCTATGATGCAGGAAGTAATGGGAAGCATCCTTATGTTAACCGCTATCCTGGTATCGGGC CTGGTTATAGGCATGAATATAATTGATGAAAAAGAAACAGGTGTAATCAACGCCCTGACCGTATCACCACTAAAACTACG TGATTTTATTATTTCCCATACCACAGTAGCCCTTATTAGCGGGATAATAATTTCAGTTTTATCATTATTAATCCTGGTCG GGACATCCATTAATTATATTCAGGTTATCTTGGGTACTATCTGTACCATGGGTATAGGTATTGCCTGGGGCTTTTTAATA GGTGGTATTGCTGATAATCTAATGTCCGGGATAGCGGTTATCAAAGGCACTATGCTGTTTTTAATAGGTATACCCATCGG CTCTATCTTTGTCCCGGCTAACTTTAGATGGATTTTATACCCCTTTCCCAACTACTGGGCCTTTCAGGTCTACCGCAATA TCTTGAATGGTGGTAAACAGTGGGTCAGCTTCAGTTCTTCAGCCTGGATTACTCTGGCCTTTGGTTTAATACTATTATTG GCTTTAAGCCCGATGCTCAAAAAAAGGTTAAATCTAAAATAA
Upstream 100 bases:
>100_bases TATCCTCCCTGAACTGGATGCTGGTAGTAGAAAACCTGATAGTTTTAGCAATAAGTTACCTGGCTGTCCACCGAAAACTT ATGAGGGAGGATAAATAGAT
Downstream 100 bases:
>100_bases ACCACAATATTTACACCATGATATTAAAATTAACATTAAAAGTAGCATATCCTAAATTAGCCGCCCACAATAATATCCGG GCGGTTAATTTAATTGTTAT
Product: ABC-2 type transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 333; Mature: 333
Protein sequence:
>333_residues MFKKIINLIKKDLINGLRNNMVIYMLLFPLVLALGMSFFIPSVTEVEVTIAVDSGVDQWVINRLEDYGKVELYDSPEAVK ERVKRLDDISGIIKDEDEYVVLIEGNEPEETVDMARAVMNMVLSDEQPADFKYKSLNKETSMMQEVMGSILMLTAILVSG LVIGMNIIDEKETGVINALTVSPLKLRDFIISHTTVALISGIIISVLSLLILVGTSINYIQVILGTICTMGIGIAWGFLI GGIADNLMSGIAVIKGTMLFLIGIPIGSIFVPANFRWILYPFPNYWAFQVYRNILNGGKQWVSFSSSAWITLAFGLILLL ALSPMLKKRLNLK
Sequences:
>Translated_333_residues MFKKIINLIKKDLINGLRNNMVIYMLLFPLVLALGMSFFIPSVTEVEVTIAVDSGVDQWVINRLEDYGKVELYDSPEAVK ERVKRLDDISGIIKDEDEYVVLIEGNEPEETVDMARAVMNMVLSDEQPADFKYKSLNKETSMMQEVMGSILMLTAILVSG LVIGMNIIDEKETGVINALTVSPLKLRDFIISHTTVALISGIIISVLSLLILVGTSINYIQVILGTICTMGIGIAWGFLI GGIADNLMSGIAVIKGTMLFLIGIPIGSIFVPANFRWILYPFPNYWAFQVYRNILNGGKQWVSFSSSAWITLAFGLILLL ALSPMLKKRLNLK >Mature_333_residues MFKKIINLIKKDLINGLRNNMVIYMLLFPLVLALGMSFFIPSVTEVEVTIAVDSGVDQWVINRLEDYGKVELYDSPEAVK ERVKRLDDISGIIKDEDEYVVLIEGNEPEETVDMARAVMNMVLSDEQPADFKYKSLNKETSMMQEVMGSILMLTAILVSG LVIGMNIIDEKETGVINALTVSPLKLRDFIISHTTVALISGIIISVLSLLILVGTSINYIQVILGTICTMGIGIAWGFLI GGIADNLMSGIAVIKGTMLFLIGIPIGSIFVPANFRWILYPFPNYWAFQVYRNILNGGKQWVSFSSSAWITLAFGLILLL ALSPMLKKRLNLK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 36962; Mature: 36962
Theoretical pI: Translated: 4.86; Mature: 4.86
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 4.8 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 4.8 %Met (Mature Protein) 5.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFKKIINLIKKDLINGLRNNMVIYMLLFPLVLALGMSFFIPSVTEVEVTIAVDSGVDQWV CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHH INRLEDYGKVELYDSPEAVKERVKRLDDISGIIKDEDEYVVLIEGNEPEETVDMARAVMN HHHHHHCCCEEEECCHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHH MVLSDEQPADFKYKSLNKETSMMQEVMGSILMLTAILVSGLVIGMNIIDEKETGVINALT HHHCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEE VSPLKLRDFIISHTTVALISGIIISVLSLLILVGTSINYIQVILGTICTMGIGIAWGFLI ECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH GGIADNLMSGIAVIKGTMLFLIGIPIGSIFVPANFRWILYPFPNYWAFQVYRNILNGGKQ HHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCEEEEECCCCHHHHHHHHHHHCCCHH WVSFSSSAWITLAFGLILLLALSPMLKKRLNLK HHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MFKKIINLIKKDLINGLRNNMVIYMLLFPLVLALGMSFFIPSVTEVEVTIAVDSGVDQWV CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHH INRLEDYGKVELYDSPEAVKERVKRLDDISGIIKDEDEYVVLIEGNEPEETVDMARAVMN HHHHHHCCCEEEECCHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHH MVLSDEQPADFKYKSLNKETSMMQEVMGSILMLTAILVSGLVIGMNIIDEKETGVINALT HHHCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEE VSPLKLRDFIISHTTVALISGIIISVLSLLILVGTSINYIQVILGTICTMGIGIAWGFLI ECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH GGIADNLMSGIAVIKGTMLFLIGIPIGSIFVPANFRWILYPFPNYWAFQVYRNILNGGKQ HHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCEEEEECCCCHHHHHHHHHHHCCCHH WVSFSSSAWITLAFGLILLLALSPMLKKRLNLK HHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA