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The map label for this gene is intD [C]

Identifier: 220931210

GI number: 220931210

Start: 370625

End: 371800

Strand: Direct

Name: intD [C]

Synonym: Hore_03620

Alternate gene names: 220931210

Gene position: 370625-371800 (Clockwise)

Preceding gene: 220931209

Following gene: 220931212

Centisome position: 14.38

GC content: 38.52

Gene sequence:

>1176_bases
ATGGCCCGAGGAGCTGGGGAAGGAACTATTGTTAAACGTAAAGATGGCCTATGGCAGGGAGCCGTTACAATTGGGACAGA
TCCGCAGACCGGGAAACAGAAGCGTAAATATTTTTATGGCAAGACTAAAAAAGAAGTTGCAAAGAAAATGACAGAATTAA
AGATGAAACTGTTTAACGGTACATATTCAGAACCTAGCGAAATGAAGTTAATAGATTGGCTTCACAGGTGGATTGAAGGC
CGGAAGTCCACATTAGCATATAGCACATACAGAAACTATAAAGTTATGATTAACAACCATTTGGCCGATGATATAGGGGA
AACAAAACTAAAAGATTTGAAGGCCCGGCAGGTGCAGGAATTACTTAATGATAAATTGGAGAAGGGTAAAGTTTATGGGG
AAGGTGGTTTATCCCCCAGAACCGTTAAATATATCTATTCTACATTACACACAGCGCTTGAGCAGGCAGTCAAGGAGAAT
ATGATACCACGTAACATTTGTAAAGCCGTTGAGGTCCCTAAAAAGCAGGAAGAAAAGAAGCTGCATACCTGGAATAAGAA
ACAGGTTAACATATTCCTGAAGGCAGCCAGAGACTACAAATATTTTATTCTTCATTACCTTGCATTAAATACCGGCATGA
GAAGAGGGGAATTATTAGGCCTGCAATGGAAGGATATTGACATGGAGAAAAAGCGAATTGAGGTAAAACGACAGTTGGCC
CGGACAGATGAAGGACTGATTTTCAAAAAAGTAAAGACAAAATCAGGTAATAGGACCATACCAATAACTGATAATGTAGT
AAGGGAATTAAAACGACATCAAATAAAGCAGGGTGAAAAACGGTTAGCATTGGGAGAAGCATACAATAAAAAAGCAGATT
TAGTTGCAAGTAATGGAATAGGTAACCCGATAGATCCCCGGAATTTAGTAAGAGATTTTAAGGATATAATAGAGGAAACT
GGATTACCTGAAATAAGGTATCATGATTTAAGGCATACCTTTGCTACTCTATTCCTGGAAGCGAAAGGGCCAATTAAAAC
CCTGCAGCAGATATTAGGACACTCTTCCATTACAGTAACAATTGACACTTATTCACACGTAACAGAGGAAATGCTAATTG
AAGCAGAACGGAAAATGGAAACTATGTTTAAGGTTATTGGTAATGATAAAGAGTAA

Upstream 100 bases:

>100_bases
AACCGCAGATTATTTGATGAAGAATTAATAAAAGGCAAAATCAAAATAAAGTGTCCGAGATGTGGGCAAATAAATATATT
AAAAAGAGGGACTGATTAAT

Downstream 100 bases:

>100_bases
AATCACTACATCTATCACTACATCTATTTGGGCTGAAAATAGGGTTATTAGCCTGAAAATGTTGGAAATAACTTACATTA
CTAATCCTTTATAATCCCCG

Product: phage integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 391; Mature: 390

Protein sequence:

>391_residues
MARGAGEGTIVKRKDGLWQGAVTIGTDPQTGKQKRKYFYGKTKKEVAKKMTELKMKLFNGTYSEPSEMKLIDWLHRWIEG
RKSTLAYSTYRNYKVMINNHLADDIGETKLKDLKARQVQELLNDKLEKGKVYGEGGLSPRTVKYIYSTLHTALEQAVKEN
MIPRNICKAVEVPKKQEEKKLHTWNKKQVNIFLKAARDYKYFILHYLALNTGMRRGELLGLQWKDIDMEKKRIEVKRQLA
RTDEGLIFKKVKTKSGNRTIPITDNVVRELKRHQIKQGEKRLALGEAYNKKADLVASNGIGNPIDPRNLVRDFKDIIEET
GLPEIRYHDLRHTFATLFLEAKGPIKTLQQILGHSSITVTIDTYSHVTEEMLIEAERKMETMFKVIGNDKE

Sequences:

>Translated_391_residues
MARGAGEGTIVKRKDGLWQGAVTIGTDPQTGKQKRKYFYGKTKKEVAKKMTELKMKLFNGTYSEPSEMKLIDWLHRWIEG
RKSTLAYSTYRNYKVMINNHLADDIGETKLKDLKARQVQELLNDKLEKGKVYGEGGLSPRTVKYIYSTLHTALEQAVKEN
MIPRNICKAVEVPKKQEEKKLHTWNKKQVNIFLKAARDYKYFILHYLALNTGMRRGELLGLQWKDIDMEKKRIEVKRQLA
RTDEGLIFKKVKTKSGNRTIPITDNVVRELKRHQIKQGEKRLALGEAYNKKADLVASNGIGNPIDPRNLVRDFKDIIEET
GLPEIRYHDLRHTFATLFLEAKGPIKTLQQILGHSSITVTIDTYSHVTEEMLIEAERKMETMFKVIGNDKE
>Mature_390_residues
ARGAGEGTIVKRKDGLWQGAVTIGTDPQTGKQKRKYFYGKTKKEVAKKMTELKMKLFNGTYSEPSEMKLIDWLHRWIEGR
KSTLAYSTYRNYKVMINNHLADDIGETKLKDLKARQVQELLNDKLEKGKVYGEGGLSPRTVKYIYSTLHTALEQAVKENM
IPRNICKAVEVPKKQEEKKLHTWNKKQVNIFLKAARDYKYFILHYLALNTGMRRGELLGLQWKDIDMEKKRIEVKRQLAR
TDEGLIFKKVKTKSGNRTIPITDNVVRELKRHQIKQGEKRLALGEAYNKKADLVASNGIGNPIDPRNLVRDFKDIIEETG
LPEIRYHDLRHTFATLFLEAKGPIKTLQQILGHSSITVTIDTYSHVTEEMLIEAERKMETMFKVIGNDKE

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786748, Length=178, Percent_Identity=24.7191011235955, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1790244, Length=245, Percent_Identity=25.7142857142857, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 45165; Mature: 45034

Theoretical pI: Translated: 10.31; Mature: 10.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARGAGEGTIVKRKDGLWQGAVTIGTDPQTGKQKRKYFYGKTKKEVAKKMTELKMKLFNG
CCCCCCCCCEEECCCCCEECCEEECCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHCC
TYSEPSEMKLIDWLHRWIEGRKSTLAYSTYRNYKVMINNHLADDIGETKLKDLKARQVQE
CCCCCHHHHHHHHHHHHHCCCHHHEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHH
LLNDKLEKGKVYGEGGLSPRTVKYIYSTLHTALEQAVKENMIPRNICKAVEVPKKQEEKK
HHHHHHHHCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHH
LHTWNKKQVNIFLKAARDYKYFILHYLALNTGMRRGELLGLQWKDIDMEKKRIEVKRQLA
HHCCCCHHEEEEEEECCCHHHHHHHHHHHHCCCCCCCEECCEECCCCHHHHHHHHHHHHH
RTDEGLIFKKVKTKSGNRTIPITDNVVRELKRHQIKQGEKRLALGEAYNKKADLVASNGI
HCCCCEEEEEEECCCCCEEECCCHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCEEECCCC
GNPIDPRNLVRDFKDIIEETGLPEIRYHDLRHTFATLFLEAKGPIKTLQQILGHSSITVT
CCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCEEEE
IDTYSHVTEEMLIEAERKMETMFKVIGNDKE
ECCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
ARGAGEGTIVKRKDGLWQGAVTIGTDPQTGKQKRKYFYGKTKKEVAKKMTELKMKLFNG
CCCCCCCCEEECCCCCEECCEEECCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHCC
TYSEPSEMKLIDWLHRWIEGRKSTLAYSTYRNYKVMINNHLADDIGETKLKDLKARQVQE
CCCCCHHHHHHHHHHHHHCCCHHHEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHH
LLNDKLEKGKVYGEGGLSPRTVKYIYSTLHTALEQAVKENMIPRNICKAVEVPKKQEEKK
HHHHHHHHCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHH
LHTWNKKQVNIFLKAARDYKYFILHYLALNTGMRRGELLGLQWKDIDMEKKRIEVKRQLA
HHCCCCHHEEEEEEECCCHHHHHHHHHHHHCCCCCCCEECCEECCCCHHHHHHHHHHHHH
RTDEGLIFKKVKTKSGNRTIPITDNVVRELKRHQIKQGEKRLALGEAYNKKADLVASNGI
HCCCCEEEEEEECCCCCEEECCCHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCEEECCCC
GNPIDPRNLVRDFKDIIEETGLPEIRYHDLRHTFATLFLEAKGPIKTLQQILGHSSITVT
CCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCEEEE
IDTYSHVTEEMLIEAERKMETMFKVIGNDKE
ECCHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11997336 [H]