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The map label for this gene is ydcN [H]

Identifier: 220931033

GI number: 220931033

Start: 190951

End: 191499

Strand: Direct

Name: ydcN [H]

Synonym: Hore_01840

Alternate gene names: 220931033

Gene position: 190951-191499 (Clockwise)

Preceding gene: 220931030

Following gene: 220931034

Centisome position: 7.41

GC content: 37.52

Gene sequence:

>549_bases
GTGAATGAGATAAATGCTAATATAGGAAAAAAACTCAGAAAATTAAGGATAGGAAAAGGTTATAGCCTTGGTGACCTTGA
AGAGATTGCCGGGGTTAGTAAATCAATGCTGGGACAAATTGAGAGAGGGAAGACCAATCCCACTGTTAAAACCCTGTGGA
AGGTAGCCAGAAGCCTCAATGTCCCTTTTTCATTTTTTATAGAAGAAGAGACATCACCAGTTAAAGTTTTTTCACCTTCT
AAAGAAGTACTGGTATCTGGAAAAAAAGGCCGGTACAGGGTATATCCCCTGATGCCTTTAAACCGTACTAAAAATTTTGA
GATATATCTAATGGAGATTGAACCAGGTTATAGTTATAAATCAGAACCTCACAGCCAGGGGGTCGAAGAGTTTGTTATGG
TAAAAGAAGGTATTCTAAGATTAACTGTTAATAGTAAAGAATACAAAGCCAGAGAAGAAGAAATTATTCATTTTCCTGGA
GACAGGGTCCATATTTATCATAATATATCTGAGACCCCCCTGAAGGCTTATGTACTGGTGTGTTACTGA

Upstream 100 bases:

>100_bases
AATATGGAAAAATTATATTCAAGAAGGTTTTTATGAAGCTTTCTGATGTACCAGTGAAAGATACTTACTGAAATATGGAG
TGGAGTGGGGGTTTTTGCCT

Downstream 100 bases:

>100_bases
ACGGAATAATCTACACTCATATTTAAATAACTGTTAAACCCTGAATGAATTTATTATAAAAATTATTAAGAAAGGAGTTT
CAAGATGAGTAAGTACTGGA

Product: XRE family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 182; Mature: 182

Protein sequence:

>182_residues
MNEINANIGKKLRKLRIGKGYSLGDLEEIAGVSKSMLGQIERGKTNPTVKTLWKVARSLNVPFSFFIEEETSPVKVFSPS
KEVLVSGKKGRYRVYPLMPLNRTKNFEIYLMEIEPGYSYKSEPHSQGVEEFVMVKEGILRLTVNSKEYKAREEEIIHFPG
DRVHIYHNISETPLKAYVLVCY

Sequences:

>Translated_182_residues
MNEINANIGKKLRKLRIGKGYSLGDLEEIAGVSKSMLGQIERGKTNPTVKTLWKVARSLNVPFSFFIEEETSPVKVFSPS
KEVLVSGKKGRYRVYPLMPLNRTKNFEIYLMEIEPGYSYKSEPHSQGVEEFVMVKEGILRLTVNSKEYKAREEEIIHFPG
DRVHIYHNISETPLKAYVLVCY
>Mature_182_residues
MNEINANIGKKLRKLRIGKGYSLGDLEEIAGVSKSMLGQIERGKTNPTVKTLWKVARSLNVPFSFFIEEETSPVKVFSPS
KEVLVSGKKGRYRVYPLMPLNRTKNFEIYLMEIEPGYSYKSEPHSQGVEEFVMVKEGILRLTVNSKEYKAREEEIIHFPG
DRVHIYHNISETPLKAYVLVCY

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787704, Length=183, Percent_Identity=36.6120218579235, Blast_Score=115, Evalue=1e-27,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013096
- InterPro:   IPR011051
- InterPro:   IPR001387
- InterPro:   IPR010982
- InterPro:   IPR014710 [H]

Pfam domain/function: PF07883 Cupin_2; PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 20889; Mature: 20889

Theoretical pI: Translated: 9.69; Mature: 9.69

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNEINANIGKKLRKLRIGKGYSLGDLEEIAGVSKSMLGQIERGKTNPTVKTLWKVARSLN
CCCCCHHHHHHHHHHHCCCCCCCCCHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHCC
VPFSFFIEEETSPVKVFSPSKEVLVSGKKGRYRVYPLMPLNRTKNFEIYLMEIEPGYSYK
CCEEEEEECCCCCEEEECCCHHEEEECCCCCEEEEECCCCCCCCCEEEEEEEECCCCCCC
SEPHSQGVEEFVMVKEGILRLTVNSKEYKAREEEIIHFPGDRVHIYHNISETPLKAYVLV
CCCCHHHHHHHHHHHCCEEEEEECCHHHHCCCCEEEECCCCEEEEEECCCCCCCEEEEEE
CY
EC
>Mature Secondary Structure
MNEINANIGKKLRKLRIGKGYSLGDLEEIAGVSKSMLGQIERGKTNPTVKTLWKVARSLN
CCCCCHHHHHHHHHHHCCCCCCCCCHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHCC
VPFSFFIEEETSPVKVFSPSKEVLVSGKKGRYRVYPLMPLNRTKNFEIYLMEIEPGYSYK
CCEEEEEECCCCCEEEECCCHHEEEECCCCCEEEEECCCCCCCCCEEEEEEEECCCCCCC
SEPHSQGVEEFVMVKEGILRLTVNSKEYKAREEEIIHFPGDRVHIYHNISETPLKAYVLV
CCCCHHHHHHHHHHHCCEEEEEECCHHHHCCCCEEEECCCCEEEEEECCCCCCCEEEEEE
CY
EC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]