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The map label for this gene is ydeB [H]

Identifier: 220930938

GI number: 220930938

Start: 109298

End: 109828

Strand: Direct

Name: ydeB [H]

Synonym: Hore_00900

Alternate gene names: 220930938

Gene position: 109298-109828 (Clockwise)

Preceding gene: 220930937

Following gene: 220930939

Centisome position: 4.24

GC content: 38.23

Gene sequence:

>531_bases
ATGGCTAATGAAGAGGGGTTGATTAACAAGATGTTTAAAGTTGGTGACAAAGTAGTATATCCCAATCATGGGGCTGGTAC
GATAGTCGGTATAGAGACCAAAAATATTCTGGGAGAAGAGAAAAAATATTATATCATGAAATTGCCGATCGGGGATATGA
AGGTTATGATTCCGGTTGAAAAAGTTGAAGAGATTGGAGTCAGGAACATTATCGACGAGGAAGAGGCCGATAATGTTTTA
AAGTTATTAAAAGGCGATAAAAGTAAGATGTCACAGAACTGGAACCGGCGTTACCGGGCCAATATGGAAAAATTGAAGAC
CGGTGATATATATGAGGTTGGGGAAGTTGTCAGGAATCTGACCATCCGCGACCATGAAAAAGGTTTATCTACCGGTGAGA
AAAAAATGTTAAGTAATGCCCGCCAGATTTTAATAAGTGAACTGGTTTTGGCCAAGGATATGGATGAAAAAGAAGTTGAA
GAAATAATCGACAATGTTTTTGAAGAAAATCCCAATCTTGATGAAGAGTAA

Upstream 100 bases:

>100_bases
CGTTATTGGAAGTTAATAATAGTTTATTACAGATATAACCGAGAAATTGCCTTAATTGACAGTTGCCCCGGGAAATGTTA
TAATTACTCTGAGGAATTTT

Downstream 100 bases:

>100_bases
TTTTTTAAAATACTGAGAAAGGAGGGATTGATTATAGAAAGTTTTCATAAAAATAGGAATTGTTATATATATATTTGGTA
ATAATAATGGAAAGGAGGTG

Product: transcriptional regulator, CarD family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 176; Mature: 175

Protein sequence:

>176_residues
MANEEGLINKMFKVGDKVVYPNHGAGTIVGIETKNILGEEKKYYIMKLPIGDMKVMIPVEKVEEIGVRNIIDEEEADNVL
KLLKGDKSKMSQNWNRRYRANMEKLKTGDIYEVGEVVRNLTIRDHEKGLSTGEKKMLSNARQILISELVLAKDMDEKEVE
EIIDNVFEENPNLDEE

Sequences:

>Translated_176_residues
MANEEGLINKMFKVGDKVVYPNHGAGTIVGIETKNILGEEKKYYIMKLPIGDMKVMIPVEKVEEIGVRNIIDEEEADNVL
KLLKGDKSKMSQNWNRRYRANMEKLKTGDIYEVGEVVRNLTIRDHEKGLSTGEKKMLSNARQILISELVLAKDMDEKEVE
EIIDNVFEENPNLDEE
>Mature_175_residues
ANEEGLINKMFKVGDKVVYPNHGAGTIVGIETKNILGEEKKYYIMKLPIGDMKVMIPVEKVEEIGVRNIIDEEEADNVLK
LLKGDKSKMSQNWNRRYRANMEKLKTGDIYEVGEVVRNLTIRDHEKGLSTGEKKMLSNARQILISELVLAKDMDEKEVEE
IIDNVFEENPNLDEE

Specific function: Unknown

COG id: COG1329

COG function: function code K; Transcriptional regulators, similar to M. xanthus CarD

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003711 [H]

Pfam domain/function: PF02559 CarD_TRCF [H]

EC number: NA

Molecular weight: Translated: 20153; Mature: 20022

Theoretical pI: Translated: 4.67; Mature: 4.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANEEGLINKMFKVGDKVVYPNHGAGTIVGIETKNILGEEKKYYIMKLPIGDMKVMIPVE
CCCCHHHHHHHHHHCCEEECCCCCCCEEEEEEHHHHHCCCCCEEEEEECCCCEEEEEEHH
KVEEIGVRNIIDEEEADNVLKLLKGDKSKMSQNWNRRYRANMEKLKTGDIYEVGEVVRNL
HHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHC
TIRDHEKGLSTGEKKMLSNARQILISELVLAKDMDEKEVEEIIDNVFEENPNLDEE
CCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
ANEEGLINKMFKVGDKVVYPNHGAGTIVGIETKNILGEEKKYYIMKLPIGDMKVMIPVE
CCCHHHHHHHHHHCCEEECCCCCCCEEEEEEHHHHHCCCCCEEEEEECCCCEEEEEEHH
KVEEIGVRNIIDEEEADNVLKLLKGDKSKMSQNWNRRYRANMEKLKTGDIYEVGEVVRNL
HHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHC
TIRDHEKGLSTGEKKMLSNARQILISELVLAKDMDEKEVEEIIDNVFEENPNLDEE
CCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]