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The map label for this gene is ycjO [C]

Identifier: 220930927

GI number: 220930927

Start: 91772

End: 92560

Strand: Direct

Name: ycjO [C]

Synonym: Hore_00790

Alternate gene names: 220930927

Gene position: 91772-92560 (Clockwise)

Preceding gene: 220930926

Following gene: 220930928

Centisome position: 3.56

GC content: 38.91

Gene sequence:

>789_bases
ATGTCTTTCCGCAATTCTTTTTTTCACGAAATATTAATCAGACCCTGGGAAGGGACAAAGTTTGTAGCTTTCAGTAACTA
TTTCAAATTATTATCTTCGGGGGATTTCTGGTCATCTTTTTCCCGGACCATTGGCTGGACAGTATCTTCGGTAATTGGTA
AAACCGTGATTGGTTTGATTATTGCCCTATTATTGAATAAAAAATTCAGGGGACGTGGCATTTACCGGACTCTGATACTG
GTTCCCTGGGTAACACCACAGGTTATCGGGGCAATAGTCTGGAAGTGGATTTATAATGGTGAATACGGTATGCTAAATTA
TGTTCTTATTAAACTGGGGTTTTTAGAGCAGGGTCATTCCTGGCTGGGAAATCCGGATACAGCTTTTCTATCATGTTTAA
TAGATGATATCTGGGTAGGTATTCCCTTTATGTCCATTGTTTTTTTAGCAGGCTTACAGGCTATTCCCCAGGAAATGTAT
GAAGCAGCCCAGGTGGATGGAGCCGGTAAGTTAAAGCAGTTGTTTTTTATTACCTTACCCCAGTTGAAACCGGTCTTTTT
AACGGCAACAATTCTATCAACAATCTGGACTTTTAATTCCTTTAATATAATCTGGACCCTGACCCGGGGGGGACCGGTAA
ATGCTACTGAAATACTTGTTGTTAAAACCTATAAAACAGCTTTTCAAAAGTTTAACATTGGACTGGGTTCTACCTATGCC
GTTATTATCTTTATTATTCTTATGATTTTCAGTATAACTTACTGGAGGAGGTTTAATGATGAACTCTAG

Upstream 100 bases:

>100_bases
AATTAAGTCGGGATACCGTTTTCGCAAACAATTATTTCCTTATTTGCTTCTTTTACCGGCAGGACTTTTCATTATCTTTG
TAATAGCTTATCCGGTATTA

Downstream 100 bases:

>100_bases
AGTCTGGGAAAGGGTAGACCGGGTAATTACCCATTTTTTACTTATATTATTATTAGGTATTTTATTATTTCCAGCCCTTA
TTATGATTTCAACTGCCCTC

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 261

Protein sequence:

>262_residues
MSFRNSFFHEILIRPWEGTKFVAFSNYFKLLSSGDFWSSFSRTIGWTVSSVIGKTVIGLIIALLLNKKFRGRGIYRTLIL
VPWVTPQVIGAIVWKWIYNGEYGMLNYVLIKLGFLEQGHSWLGNPDTAFLSCLIDDIWVGIPFMSIVFLAGLQAIPQEMY
EAAQVDGAGKLKQLFFITLPQLKPVFLTATILSTIWTFNSFNIIWTLTRGGPVNATEILVVKTYKTAFQKFNIGLGSTYA
VIIFIILMIFSITYWRRFNDEL

Sequences:

>Translated_262_residues
MSFRNSFFHEILIRPWEGTKFVAFSNYFKLLSSGDFWSSFSRTIGWTVSSVIGKTVIGLIIALLLNKKFRGRGIYRTLIL
VPWVTPQVIGAIVWKWIYNGEYGMLNYVLIKLGFLEQGHSWLGNPDTAFLSCLIDDIWVGIPFMSIVFLAGLQAIPQEMY
EAAQVDGAGKLKQLFFITLPQLKPVFLTATILSTIWTFNSFNIIWTLTRGGPVNATEILVVKTYKTAFQKFNIGLGSTYA
VIIFIILMIFSITYWRRFNDEL
>Mature_261_residues
SFRNSFFHEILIRPWEGTKFVAFSNYFKLLSSGDFWSSFSRTIGWTVSSVIGKTVIGLIIALLLNKKFRGRGIYRTLILV
PWVTPQVIGAIVWKWIYNGEYGMLNYVLIKLGFLEQGHSWLGNPDTAFLSCLIDDIWVGIPFMSIVFLAGLQAIPQEMYE
AAQVDGAGKLKQLFFITLPQLKPVFLTATILSTIWTFNSFNIIWTLTRGGPVNATEILVVKTYKTAFQKFNIGLGSTYAV
IIFIILMIFSITYWRRFNDEL

Specific function: Probably part of an ABC transporter complex. Probably responsible for the translocation of the substrate across the membrane (Probable) [H]

COG id: COG1175

COG function: function code G; ABC-type sugar transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787570, Length=253, Percent_Identity=35.9683794466403, Blast_Score=157, Evalue=5e-40,
Organism=Escherichia coli, GI1790465, Length=229, Percent_Identity=31.4410480349345, Blast_Score=116, Evalue=1e-27,
Organism=Escherichia coli, GI1789861, Length=240, Percent_Identity=26.6666666666667, Blast_Score=112, Evalue=2e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 29902; Mature: 29770

Theoretical pI: Translated: 10.03; Mature: 10.03

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFRNSFFHEILIRPWEGTKFVAFSNYFKLLSSGDFWSSFSRTIGWTVSSVIGKTVIGLI
CCCHHHHHHHHHCCCCCCCEEEHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
IALLLNKKFRGRGIYRTLILVPWVTPQVIGAIVWKWIYNGEYGMLNYVLIKLGFLEQGHS
HHHHHCCCCCCCCCEEHHEEECCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCC
WLGNPDTAFLSCLIDDIWVGIPFMSIVFLAGLQAIPQEMYEAAQVDGAGKLKQLFFITLP
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHEEECC
QLKPVFLTATILSTIWTFNSFNIIWTLTRGGPVNATEILVVKTYKTAFQKFNIGLGSTYA
CCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCEEEEEEEHHHHHHHHHCCCCCCHHH
VIIFIILMIFSITYWRRFNDEL
HHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SFRNSFFHEILIRPWEGTKFVAFSNYFKLLSSGDFWSSFSRTIGWTVSSVIGKTVIGLI
CCHHHHHHHHHCCCCCCCEEEHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
IALLLNKKFRGRGIYRTLILVPWVTPQVIGAIVWKWIYNGEYGMLNYVLIKLGFLEQGHS
HHHHHCCCCCCCCCEEHHEEECCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCC
WLGNPDTAFLSCLIDDIWVGIPFMSIVFLAGLQAIPQEMYEAAQVDGAGKLKQLFFITLP
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHEEECC
QLKPVFLTATILSTIWTFNSFNIIWTLTRGGPVNATEILVVKTYKTAFQKFNIGLGSTYA
CCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCEEEEEEEHHHHHHHHHCCCCCCHHH
VIIFIILMIFSITYWRRFNDEL
HHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA