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The map label for this gene is ycjO [C]

Identifier: 220930887

GI number: 220930887

Start: 43746

End: 44894

Strand: Direct

Name: ycjO [C]

Synonym: Hore_00390

Alternate gene names: 220930887

Gene position: 43746-44894 (Clockwise)

Preceding gene: 220930886

Following gene: 220930888

Centisome position: 1.7

GC content: 37.86

Gene sequence:

>1149_bases
TTGCAGAAAAAGTGGGCCTACTGGAAAGAGAAAATGGCACCATATGTTTTACTGGCACCTTTTTTATTCTGGTTTATTAT
ATTTTTTGGTTATGCTTTTATCAGAGTGGTATACTTTAGCTTTACTAAATATAATCTATTTGATCCCCCTACATTTGTAG
GTTTTAAAAATTATTTAGATCTTTTTCGGGAGTATTTATTTGGTGTTGCCTTCAGGAATACCCTTATGTACTCTATTATT
GTCACCACTGTGCAGACCATTTTTGCCCTCATTCTGGCTGTTGTTATGAATCAAAAAATTAAAGGAATCAGGTTTTTCAG
GGCTGCCTATTATATGCCCAGCGTTACTTCCAGTGTTGTTATTACATTAATTTTTATCTGGTTATTTCAACGCAAAGGTT
TAATTAACTATTTGGTAACCCTTTATCATAGTTATGGAAAAATGATAGGAGTCTTTTTTCTTTTGTTGATAGCCATGCAG
GCCCTTTTGGTTTTTAAGGAAAAAAGGCAGGGTAGGCCGGTTAAATACTTAGAACCGAGTTATTTAGTTCTGTCGATTTT
GTTTGCAGCAATTGTTACCTATATACTGAGAATAATGGGATATATAACAGTGGTAGATGTTAAACCGGTGGATATTATAT
GGCTAAATACCAGGGAAAAGGTTTTTGGGTGGCTGGGGCCGTTATCATTTGCCAGACCCCTGGGTGCTATAATGATTTTG
AATATCTGGACCACTATTCCGACCTTTATGCTTATATATCTTGCCGGTTTACAGGACATTCCATCTTCATTATATGAAGC
TGCTGAAGTTGATGGGGCCAATACCTGGCAAAAGTTCAGGTATGTTACTATTCCCCAGTTGAGGCACATTACTTTTTTAG
TAGTGACTCTGGGTCTGATTGGAACTCTTCAGGTTTTTGACCAGATTGCTATAGTTGGGGATCAGGCTCCTCTTGAATCT
ATTGTGACCCTGGCCTATTATGTCTATAGAAATACATTCCCCAGTTCAGCAACTCCTCATGCCGGGATGGCCAGTGCTGG
AGCTATAGTCCTGGCTTTGATTACTTTAACACTGGTATTAATCCGGAAAAAAAATATCCGGAGAGGGGAGAGATTAATAT
GGCCCGTCTTAAAACGAAAGAAAATATAG

Upstream 100 bases:

>100_bases
AAGACTTGAACAGGACATAATGAATAAATAAAAGTAGACCCTGGAGAGGGGGAGCGGGGGATTCCCCACTCCCCTTTTTT
ATAAATAGGAGGTGACCGTC

Downstream 100 bases:

>100_bases
AGGAAATCAATCTTAAGATCAGGCGTAAAAGGTGGAGAAATGTTGCTGCTATTTATCTAATATTACTGATATTTTCTATC
CTGTTCATGGGCCCCTTTTT

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 382; Mature: 382

Protein sequence:

>382_residues
MQKKWAYWKEKMAPYVLLAPFLFWFIIFFGYAFIRVVYFSFTKYNLFDPPTFVGFKNYLDLFREYLFGVAFRNTLMYSII
VTTVQTIFALILAVVMNQKIKGIRFFRAAYYMPSVTSSVVITLIFIWLFQRKGLINYLVTLYHSYGKMIGVFFLLLIAMQ
ALLVFKEKRQGRPVKYLEPSYLVLSILFAAIVTYILRIMGYITVVDVKPVDIIWLNTREKVFGWLGPLSFARPLGAIMIL
NIWTTIPTFMLIYLAGLQDIPSSLYEAAEVDGANTWQKFRYVTIPQLRHITFLVVTLGLIGTLQVFDQIAIVGDQAPLES
IVTLAYYVYRNTFPSSATPHAGMASAGAIVLALITLTLVLIRKKNIRRGERLIWPVLKRKKI

Sequences:

>Translated_382_residues
MQKKWAYWKEKMAPYVLLAPFLFWFIIFFGYAFIRVVYFSFTKYNLFDPPTFVGFKNYLDLFREYLFGVAFRNTLMYSII
VTTVQTIFALILAVVMNQKIKGIRFFRAAYYMPSVTSSVVITLIFIWLFQRKGLINYLVTLYHSYGKMIGVFFLLLIAMQ
ALLVFKEKRQGRPVKYLEPSYLVLSILFAAIVTYILRIMGYITVVDVKPVDIIWLNTREKVFGWLGPLSFARPLGAIMIL
NIWTTIPTFMLIYLAGLQDIPSSLYEAAEVDGANTWQKFRYVTIPQLRHITFLVVTLGLIGTLQVFDQIAIVGDQAPLES
IVTLAYYVYRNTFPSSATPHAGMASAGAIVLALITLTLVLIRKKNIRRGERLIWPVLKRKKI
>Mature_382_residues
MQKKWAYWKEKMAPYVLLAPFLFWFIIFFGYAFIRVVYFSFTKYNLFDPPTFVGFKNYLDLFREYLFGVAFRNTLMYSII
VTTVQTIFALILAVVMNQKIKGIRFFRAAYYMPSVTSSVVITLIFIWLFQRKGLINYLVTLYHSYGKMIGVFFLLLIAMQ
ALLVFKEKRQGRPVKYLEPSYLVLSILFAAIVTYILRIMGYITVVDVKPVDIIWLNTREKVFGWLGPLSFARPLGAIMIL
NIWTTIPTFMLIYLAGLQDIPSSLYEAAEVDGANTWQKFRYVTIPQLRHITFLVVTLGLIGTLQVFDQIAIVGDQAPLES
IVTLAYYVYRNTFPSSATPHAGMASAGAIVLALITLTLVLIRKKNIRRGERLIWPVLKRKKI

Specific function: Probably part of the binding-protein-dependent transport system y4oPQRS. This system probably transports a sugar-like molecule. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1175

COG function: function code G; ABC-type sugar transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787570, Length=145, Percent_Identity=33.7931034482759, Blast_Score=74, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 44083; Mature: 44083

Theoretical pI: Translated: 10.43; Mature: 10.43

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHCCCCCHHHHHHHHHCCCC
>Mature Secondary Structure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HHHHCCCCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]