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The map label for this gene is araQ [H]

Identifier: 220930888

GI number: 220930888

Start: 44864

End: 46255

Strand: Direct

Name: araQ [H]

Synonym: Hore_00400

Alternate gene names: 220930888

Gene position: 44864-46255 (Clockwise)

Preceding gene: 220930887

Following gene: 220930889

Centisome position: 1.74

GC content: 40.66

Gene sequence:

>1392_bases
ATGGCCCGTCTTAAAACGAAAGAAAATATAGAGGAAATCAATCTTAAGATCAGGCGTAAAAGGTGGAGAAATGTTGCTGC
TATTTATCTAATATTACTGATATTTTCTATCCTGTTCATGGGCCCCTTTTTGTTCGGGGCAATATCATCCCTTAAGGATA
ATCCAGTTGAGTGGCCTCCTACCTTAAAAACAGCCCAGCTTTCACCCAAAAACTGGATTGGGGCTTATCGAGTTGCCAGA
CAGGGTGGGGGAGGAGGTTTTTTTGGTTGTCTTAAACCGGGGCATAATGTTTCTTTTAGAGCTACCTACTTATATCCTGA
TGGTAAAGAAATAACCCCACCCCAGGCCAGAGTTTCAAAAAGATTAGCCGGTTACGGAAAATCTGCTTTTGAACTTGATA
AAAAGTTTGCGGTAGACTATATAGAGGTTAAGTCTGTTGAGGAAATAGAACGTCAAAAAACTGATAAAGGGACCAAAGTA
ATTTATGAGATTACCCTTACTAATCCCAGTCAGTACACCTTTGATAAGGTTCCTGTTGATGTCCAGGTCCCCTATAAAGT
CAAATTTGTGGAAGCCGATTTTGAACCCAACAGGTTGGAAAGGTTAGGAATGGTTCAAAGCTGGGATAACATTGTCAGTG
GTACAATTCCTTATATCTTTCACAATTACCATCGGGTTTTTAATGAAAACTATAGCCGGACTACCGGTAGAAGCCTGTTT
TTAACCTGGATATTTAATTCATTTTTCCTATCCATAACCAGGGTTATAACTACTATTATTGTGGCTTCCATGGCCGGTTA
TGTTCTGGCCCGGTTGAACTTCGCTGGTAAAAAGGTCCTGTTTATTCTGGTTCTTTTTTCCATGATGATTCCTCTGCAGG
TTACCTTTGTTTCCAATTACCTGGTTTTAAGAGATGGTATATTTGGATTAACAAAATTGTTTGGGGTTGATACCCTGTTA
AATAGTTTAAGTGGGGTTATAATATGGGGAATGGTGGCCGGTAATTCGGTCTTTATCATGAAACAGTTTTTTGAAGGTCT
TCCCAAATCCCTTGAAGAATCGGCCCGTATTGATGGGGCCAGTACCTATACTATCTTTTCACGAATAATGCTTCCTCTGG
CTAAACCGGCTCTGGGGGCCTTAACAATCCTTACTTTTCAGGGAGCCTGGAATGATTTCTTCCTGCCCCTGGTTGTTATT
ACCTCACCGATGGATCGATTCCCTTTAACGGTGGGTTTGTTGAGTTTTAGAAGAATTTACGGGGCTGGAGGAATGGACTG
GGGTCCTGTACTGGCAGGTGCTATTATTTCAGCCCTACCAATTATAATTTTATTTGTGGTTTTCCAGCGTTACTTTGTTG
AAGGAATTAGTTTTAGTGGCATGAAAGGATAA

Upstream 100 bases:

>100_bases
ATGCCGGGATGGCCAGTGCTGGAGCTATAGTCCTGGCTTTGATTACTTTAACACTGGTATTAATCCGGAAAAAAAATATC
CGGAGAGGGGAGAGATTAAT

Downstream 100 bases:

>100_bases
AATAATTATTTGTAGTATACCTTTATCACTGGTGCAACCACCTCTGGTGGTTGTACTTTTTTGTAAATTATTCTTTAAAA
AAGATTAATTCTATAAAAAA

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 463; Mature: 462

Protein sequence:

>463_residues
MARLKTKENIEEINLKIRRKRWRNVAAIYLILLIFSILFMGPFLFGAISSLKDNPVEWPPTLKTAQLSPKNWIGAYRVAR
QGGGGGFFGCLKPGHNVSFRATYLYPDGKEITPPQARVSKRLAGYGKSAFELDKKFAVDYIEVKSVEEIERQKTDKGTKV
IYEITLTNPSQYTFDKVPVDVQVPYKVKFVEADFEPNRLERLGMVQSWDNIVSGTIPYIFHNYHRVFNENYSRTTGRSLF
LTWIFNSFFLSITRVITTIIVASMAGYVLARLNFAGKKVLFILVLFSMMIPLQVTFVSNYLVLRDGIFGLTKLFGVDTLL
NSLSGVIIWGMVAGNSVFIMKQFFEGLPKSLEESARIDGASTYTIFSRIMLPLAKPALGALTILTFQGAWNDFFLPLVVI
TSPMDRFPLTVGLLSFRRIYGAGGMDWGPVLAGAIISALPIIILFVVFQRYFVEGISFSGMKG

Sequences:

>Translated_463_residues
MARLKTKENIEEINLKIRRKRWRNVAAIYLILLIFSILFMGPFLFGAISSLKDNPVEWPPTLKTAQLSPKNWIGAYRVAR
QGGGGGFFGCLKPGHNVSFRATYLYPDGKEITPPQARVSKRLAGYGKSAFELDKKFAVDYIEVKSVEEIERQKTDKGTKV
IYEITLTNPSQYTFDKVPVDVQVPYKVKFVEADFEPNRLERLGMVQSWDNIVSGTIPYIFHNYHRVFNENYSRTTGRSLF
LTWIFNSFFLSITRVITTIIVASMAGYVLARLNFAGKKVLFILVLFSMMIPLQVTFVSNYLVLRDGIFGLTKLFGVDTLL
NSLSGVIIWGMVAGNSVFIMKQFFEGLPKSLEESARIDGASTYTIFSRIMLPLAKPALGALTILTFQGAWNDFFLPLVVI
TSPMDRFPLTVGLLSFRRIYGAGGMDWGPVLAGAIISALPIIILFVVFQRYFVEGISFSGMKG
>Mature_462_residues
ARLKTKENIEEINLKIRRKRWRNVAAIYLILLIFSILFMGPFLFGAISSLKDNPVEWPPTLKTAQLSPKNWIGAYRVARQ
GGGGGFFGCLKPGHNVSFRATYLYPDGKEITPPQARVSKRLAGYGKSAFELDKKFAVDYIEVKSVEEIERQKTDKGTKVI
YEITLTNPSQYTFDKVPVDVQVPYKVKFVEADFEPNRLERLGMVQSWDNIVSGTIPYIFHNYHRVFNENYSRTTGRSLFL
TWIFNSFFLSITRVITTIIVASMAGYVLARLNFAGKKVLFILVLFSMMIPLQVTFVSNYLVLRDGIFGLTKLFGVDTLLN
SLSGVIIWGMVAGNSVFIMKQFFEGLPKSLEESARIDGASTYTIFSRIMLPLAKPALGALTILTFQGAWNDFFLPLVVIT
SPMDRFPLTVGLLSFRRIYGAGGMDWGPVLAGAIISALPIIILFVVFQRYFVEGISFSGMKG

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789860, Length=273, Percent_Identity=26.3736263736264, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1790464, Length=226, Percent_Identity=30.0884955752212, Blast_Score=93, Evalue=3e-20,
Organism=Escherichia coli, GI1787571, Length=205, Percent_Identity=27.8048780487805, Blast_Score=84, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 52084; Mature: 51953

Theoretical pI: Translated: 10.25; Mature: 10.25

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARLKTKENIEEINLKIRRKRWRNVAAIYLILLIFSILFMGPFLFGAISSLKDNPVEWPP
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
TLKTAQLSPKNWIGAYRVARQGGGGGFFGCLKPGHNVSFRATYLYPDGKEITPPQARVSK
CCCCCCCCCCHHHHHHHHHHCCCCCCEEEECCCCCCCEEEEEEECCCCCCCCCHHHHHHH
RLAGYGKSAFELDKKFAVDYIEVKSVEEIERQKTDKGTKVIYEITLTNPSQYTFDKVPVD
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCEE
VQVPYKVKFVEADFEPNRLERLGMVQSWDNIVSGTIPYIFHNYHRVFNENYSRTTGRSLF
EECCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCHHH
LTWIFNSFFLSITRVITTIIVASMAGYVLARLNFAGKKVLFILVLFSMMIPLQVTFVSNY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCC
LVLRDGIFGLTKLFGVDTLLNSLSGVIIWGMVAGNSVFIMKQFFEGLPKSLEESARIDGA
HHHHCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCHHHHHHHCCCCC
STYTIFSRIMLPLAKPALGALTILTFQGAWNDFFLPLVVITSPMDRFPLTVGLLSFRRIY
HHHHHHHHHHHHHCCCHHCEEEEEEECCCCCCHHHHHHHHCCCCHHCCHHHHHHHHHHHH
GAGGMDWGPVLAGAIISALPIIILFVVFQRYFVEGISFSGMKG
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
ARLKTKENIEEINLKIRRKRWRNVAAIYLILLIFSILFMGPFLFGAISSLKDNPVEWPP
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
TLKTAQLSPKNWIGAYRVARQGGGGGFFGCLKPGHNVSFRATYLYPDGKEITPPQARVSK
CCCCCCCCCCHHHHHHHHHHCCCCCCEEEECCCCCCCEEEEEEECCCCCCCCCHHHHHHH
RLAGYGKSAFELDKKFAVDYIEVKSVEEIERQKTDKGTKVIYEITLTNPSQYTFDKVPVD
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCEE
VQVPYKVKFVEADFEPNRLERLGMVQSWDNIVSGTIPYIFHNYHRVFNENYSRTTGRSLF
EECCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCHHH
LTWIFNSFFLSITRVITTIIVASMAGYVLARLNFAGKKVLFILVLFSMMIPLQVTFVSNY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCC
LVLRDGIFGLTKLFGVDTLLNSLSGVIIWGMVAGNSVFIMKQFFEGLPKSLEESARIDGA
HHHHCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCHHHHHHHCCCCC
STYTIFSRIMLPLAKPALGALTILTFQGAWNDFFLPLVVITSPMDRFPLTVGLLSFRRIY
HHHHHHHHHHHHHCCCHHCEEEEEEECCCCCCHHHHHHHHCCCCHHCCHHHHHHHHHHHH
GAGGMDWGPVLAGAIISALPIIILFVVFQRYFVEGISFSGMKG
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9084180; 8969504; 9384377; 10417639 [H]