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The map label for this gene is yndD [H]

Identifier: 220930860

GI number: 220930860

Start: 11120

End: 12715

Strand: Direct

Name: yndD [H]

Synonym: Hore_00100

Alternate gene names: 220930860

Gene position: 11120-12715 (Clockwise)

Preceding gene: 220930857

Following gene: 220930861

Centisome position: 0.43

GC content: 41.04

Gene sequence:

>1596_bases
TTGAACTGGGAGCGGATAAAAGAGAGAATAGATGAAATTATCAGTAGTAATACTGATAGACCCGGGGAAAAAACATCCAA
AAAAAAATTAACCAGGGATATAAAGAAAAATGAGAAAACCATAGAAGATATAATTGGATTTAGTGATGATGTCAATTTCA
GGGAATTTAAGCTGGGAAAAAAGCTTAAAATTAAGGCAACCCTTATCTATATTGATAGCCTGGTTGATAAAAAAACAATA
AATGAAAGTATCCTCGAACCATTATTTACTGAGGAGTTTTTCAGTGATAATGTTGAGAATTTAACGACCGATGATATTGT
TAAATTTGTCCGGGATAATACCATGACCATAAATGAAGTAAAAGTCACTGAAAAGCTTGAAGATACCATCGAAGGAATCT
TAAATGGTGATTCCGTTCTGCTGGTAGATGGTTATGAACAGGTAATGGTTTTAAATACCAAGGGGTGGGAAAAAAGGTCA
GTCTCTGAACCGGTTGTAGAATCGGTAATCAGAGGACCTAGGGATGGTTTTACTGAGACCCTTGCTGTTAATACAGGTTT
AATCAGGAGGAGAGTAAAACACCCCTCATTAAGGATTAAAAATTATAATATAGGACGCTTTTCAAAAACCAGTGTTTCTA
TTTGTTACATAGAGGGTATTGCCAATAAACACCTTGTTGAAGAGGTAAAAGAGAGGATAAATAATATAAACATAGACAAT
ATCGGTAGTTCCGGTTTTGTAGAACAGTTAATAGAGGATAGTCATTTATCACCATTCCCCCAGATATTGAGTACAGAACG
GCCCGACCGGGTGGCTGCTAACCTGATGGAGGGCCGGGTTGCTGTCGTAGTTGATAACACCCCGTTTGTTTTGATTCTAC
CAATGACTATCTCTATATTTTTTCAAAGCCCGGAAGATTACCATGAACGGTTTCTGGTGGCTAATTTTATCAGGATTATA
AGGGGAATAGCTGCCTTTTTATCCTTAACCTTACCATCTATATATATTGCTCTGATATCATTCCATCCTGAAATGTTACC
GACCCGACTGGCCCTTGCCTTTGCCGGTGGCAGGGGTATGGTTCCTTTTCCCTCCTATCTGGAAGCCTTTATAATGGAGG
GTGCCATGGAACTTTTAAGGGAGGCCAGCATCCGTCTTCCCAATCCCATTGGCCCTACTATCGGTATTGTTGGGGCCCTG
ATTGTAGGTGAAGCTGCGGTCAGTGCCAGTATTGTCAGCCCTTTTATGGTAATTATTGTGGCTGTTACTACCATTGCTTC
TTTTACAATTCCCGACTACGGGAGTGCCATTGCCCTCAGGATATTGAGGTTTCCCCTTATGGTGGTGACGACCATCTTTG
GTCTCTATGGACTTATCTGGGGATTAATAGCCATAACCATTCACCTGGCCAGCCTCAAGTCCTTCGGAATCCCCTATTTA
ACCCCACTGGCCCCGTCCCGGTTATCTGACCTGAAAGACCTGGTGGTCAGGGCACCCTTCTGGTTAATGTATAGACGACC
TAAATATTTGCGGACTAAAGATGAAAAGAGGTTTTCCTCAAAAGGGGATGATGACCAGAATGAAAGAACACGGTAA

Upstream 100 bases:

>100_bases
CATTTTTAACCACCACATAAAATTACCTCTTTTAAGTCATAATATATTGTAAGCCTGAAAGCCATAAAGTCCTCATTTAC
TTGAAAGGGGTAAAAGTAAT

Downstream 100 bases:

>100_bases
ATTAAGTGAAAGGCAGTTTGCCGGGATCATTGCCAACACCATGGTCGGGGTCGGGGTATTAATATTACCTAAAACGGCAA
CTAAATTTGCCGGTACAGCC

Product: GerA spore germination protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 531; Mature: 531

Protein sequence:

>531_residues
MNWERIKERIDEIISSNTDRPGEKTSKKKLTRDIKKNEKTIEDIIGFSDDVNFREFKLGKKLKIKATLIYIDSLVDKKTI
NESILEPLFTEEFFSDNVENLTTDDIVKFVRDNTMTINEVKVTEKLEDTIEGILNGDSVLLVDGYEQVMVLNTKGWEKRS
VSEPVVESVIRGPRDGFTETLAVNTGLIRRRVKHPSLRIKNYNIGRFSKTSVSICYIEGIANKHLVEEVKERINNINIDN
IGSSGFVEQLIEDSHLSPFPQILSTERPDRVAANLMEGRVAVVVDNTPFVLILPMTISIFFQSPEDYHERFLVANFIRII
RGIAAFLSLTLPSIYIALISFHPEMLPTRLALAFAGGRGMVPFPSYLEAFIMEGAMELLREASIRLPNPIGPTIGIVGAL
IVGEAAVSASIVSPFMVIIVAVTTIASFTIPDYGSAIALRILRFPLMVVTTIFGLYGLIWGLIAITIHLASLKSFGIPYL
TPLAPSRLSDLKDLVVRAPFWLMYRRPKYLRTKDEKRFSSKGDDDQNERTR

Sequences:

>Translated_531_residues
MNWERIKERIDEIISSNTDRPGEKTSKKKLTRDIKKNEKTIEDIIGFSDDVNFREFKLGKKLKIKATLIYIDSLVDKKTI
NESILEPLFTEEFFSDNVENLTTDDIVKFVRDNTMTINEVKVTEKLEDTIEGILNGDSVLLVDGYEQVMVLNTKGWEKRS
VSEPVVESVIRGPRDGFTETLAVNTGLIRRRVKHPSLRIKNYNIGRFSKTSVSICYIEGIANKHLVEEVKERINNINIDN
IGSSGFVEQLIEDSHLSPFPQILSTERPDRVAANLMEGRVAVVVDNTPFVLILPMTISIFFQSPEDYHERFLVANFIRII
RGIAAFLSLTLPSIYIALISFHPEMLPTRLALAFAGGRGMVPFPSYLEAFIMEGAMELLREASIRLPNPIGPTIGIVGAL
IVGEAAVSASIVSPFMVIIVAVTTIASFTIPDYGSAIALRILRFPLMVVTTIFGLYGLIWGLIAITIHLASLKSFGIPYL
TPLAPSRLSDLKDLVVRAPFWLMYRRPKYLRTKDEKRFSSKGDDDQNERTR
>Mature_531_residues
MNWERIKERIDEIISSNTDRPGEKTSKKKLTRDIKKNEKTIEDIIGFSDDVNFREFKLGKKLKIKATLIYIDSLVDKKTI
NESILEPLFTEEFFSDNVENLTTDDIVKFVRDNTMTINEVKVTEKLEDTIEGILNGDSVLLVDGYEQVMVLNTKGWEKRS
VSEPVVESVIRGPRDGFTETLAVNTGLIRRRVKHPSLRIKNYNIGRFSKTSVSICYIEGIANKHLVEEVKERINNINIDN
IGSSGFVEQLIEDSHLSPFPQILSTERPDRVAANLMEGRVAVVVDNTPFVLILPMTISIFFQSPEDYHERFLVANFIRII
RGIAAFLSLTLPSIYIALISFHPEMLPTRLALAFAGGRGMVPFPSYLEAFIMEGAMELLREASIRLPNPIGPTIGIVGAL
IVGEAAVSASIVSPFMVIIVAVTTIASFTIPDYGSAIALRILRFPLMVVTTIFGLYGLIWGLIAITIHLASLKSFGIPYL
TPLAPSRLSDLKDLVVRAPFWLMYRRPKYLRTKDEKRFSSKGDDDQNERTR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gerABKA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004995 [H]

Pfam domain/function: PF03323 GerA [H]

EC number: NA

Molecular weight: Translated: 59802; Mature: 59802

Theoretical pI: Translated: 7.17; Mature: 7.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNWERIKERIDEIISSNTDRPGEKTSKKKLTRDIKKNEKTIEDIIGFSDDVNFREFKLGK
CCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCC
KLKIKATLIYIDSLVDKKTINESILEPLFTEEFFSDNVENLTTDDIVKFVRDNTMTINEV
EEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCEEEEHH
KVTEKLEDTIEGILNGDSVLLVDGYEQVMVLNTKGWEKRSVSEPVVESVIRGPRDGFTET
HHHHHHHHHHHHHHCCCCEEEEECCCEEEEEECCCCCCCCCCHHHHHHHHCCCCCCCHHH
LAVNTGLIRRRVKHPSLRIKNYNIGRFSKTSVSICYIEGIANKHLVEEVKERINNINIDN
HHHHHHHHHHHHCCCCEEEECCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCCCC
IGSSGFVEQLIEDSHLSPFPQILSTERPDRVAANLMEGRVAVVVDNTPFVLILPMTISIF
CCCHHHHHHHHHCCCCCCCHHHHCCCCCHHHHHHHHCCCEEEEECCCCEEEEEECEEEEE
FQSPEDYHERFLVANFIRIIRGIAAFLSLTLPSIYIALISFHPEMLPTRLALAFAGGRGM
ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHEECCCCC
VPFPSYLEAFIMEGAMELLREASIRLPNPIGPTIGIVGALIVGEAAVSASIVSPFMVIIV
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AVTTIASFTIPDYGSAIALRILRFPLMVVTTIFGLYGLIWGLIAITIHLASLKSFGIPYL
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
TPLAPSRLSDLKDLVVRAPFWLMYRRPKYLRTKDEKRFSSKGDDDQNERTR
CCCCHHHHHHHHHHHHHCCHHHHHCCCHHHCCCHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MNWERIKERIDEIISSNTDRPGEKTSKKKLTRDIKKNEKTIEDIIGFSDDVNFREFKLGK
CCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCC
KLKIKATLIYIDSLVDKKTINESILEPLFTEEFFSDNVENLTTDDIVKFVRDNTMTINEV
EEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCEEEEHH
KVTEKLEDTIEGILNGDSVLLVDGYEQVMVLNTKGWEKRSVSEPVVESVIRGPRDGFTET
HHHHHHHHHHHHHHCCCCEEEEECCCEEEEEECCCCCCCCCCHHHHHHHHCCCCCCCHHH
LAVNTGLIRRRVKHPSLRIKNYNIGRFSKTSVSICYIEGIANKHLVEEVKERINNINIDN
HHHHHHHHHHHHCCCCEEEECCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCCCC
IGSSGFVEQLIEDSHLSPFPQILSTERPDRVAANLMEGRVAVVVDNTPFVLILPMTISIF
CCCHHHHHHHHHCCCCCCCHHHHCCCCCHHHHHHHHCCCEEEEECCCCEEEEEECEEEEE
FQSPEDYHERFLVANFIRIIRGIAAFLSLTLPSIYIALISFHPEMLPTRLALAFAGGRGM
ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHEECCCCC
VPFPSYLEAFIMEGAMELLREASIRLPNPIGPTIGIVGALIVGEAAVSASIVSPFMVIIV
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AVTTIASFTIPDYGSAIALRILRFPLMVVTTIFGLYGLIWGLIAITIHLASLKSFGIPYL
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
TPLAPSRLSDLKDLVVRAPFWLMYRRPKYLRTKDEKRFSSKGDDDQNERTR
CCCCHHHHHHHHHHHHHCCHHHHHCCCHHHCCCHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]