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The map label for this gene is araQ [H]

Identifier: 221230227

GI number: 221230227

Start: 1712572

End: 1713423

Strand: Reverse

Name: araQ [H]

Synonym: MLBr_01425

Alternate gene names: 221230227

Gene position: 1713423-1712572 (Counterclockwise)

Preceding gene: 221230228

Following gene: 221230226

Centisome position: 52.43

GC content: 56.46

Gene sequence:

>852_bases
GTGGGCTTAGCTGAGCGACTCAACCATATAGTTAAGCGCAGTGTCTTGCGTGCGGTGGTCGTTTACATAGCGCTGACCGG
CATCGCGTGGTGCGCCCTGTTCCCCATTGTCTGGGCGTTGTCAGGCTCGTTGAAGAAGGAAGGCGAGATACGCGAACCCA
CGCTCTTGCCAGCCCATCCGCAATGGTCTAACTACACCGAGGTGTTTGATCTGATACCCTTCTGGCGAATGTTTTTCAAT
ACCGTGTTGTATGCTGGATACGTCACAGTCGGCCAGGTTTTCTTCTGCTCACTGGCTGGATATGCGTTTGCACGACTACA
ATTTCGCGGGCGCGATGCGTTGTTCGTTTTATACCTGGGCACGTTGATGATGCCACTAACTGTAACAATTATACCACAGT
TCATCCTGATGCGAGTCCTGGGATGGACTGACACGCCGTGGGCGATGATCGTGCCAGGCTTGTTCGGGAGTGCGTTCGGC
ACCTACCTCATGCGGCAGTTCTTCCGGACACTGCCGAGCGATCTCGAGGAAGCCGCAATCCTGGACGGCTGCTCGCCATG
GCAGATCTATTGGCGGGTCTTGTTGCCTCACGCCAAGCCCGCAGTGGGGGTACTTGCGGTCCTCACCTGGGTCAACGTAT
GGAACGACTTTTTGTGGCCGTTGCTGATGATCCAGCGCAACAGCCTAGCCACACTGACGTTGGGCCTAGTCCGGATGCGG
GGGGAGTACGGAACCTGCTGGCCGGTGATAATGGCGACCTCGATGCTAATCATACTGCCACTAGTCATCATCTATACGAT
CGCGCAGCGCGCCTTCGTTCGCGGTATCACCGTCACCAGGATCGGCGGGTAG

Upstream 100 bases:

>100_bases
GGTTATGCGTCGGCGCTGGCGTTGGTGACGTTCGCAATCTTGTTGGTGTTAATCGTGTTGCAGTTGCTGCTGAACCGACG
GCATTCGTGGGAGGTTTCTG

Downstream 100 bases:

>100_bases
TCATGGCTTCGGTGACCTTCGAACAAGCGACACGCCAGTTCCCTGACACAGATCGACCAGCCCTGGATCGCCTCGACCTC
GACGTCGATGATGGCGAATT

Product: putative ABC-transport protein, inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 283; Mature: 282

Protein sequence:

>283_residues
MGLAERLNHIVKRSVLRAVVVYIALTGIAWCALFPIVWALSGSLKKEGEIREPTLLPAHPQWSNYTEVFDLIPFWRMFFN
TVLYAGYVTVGQVFFCSLAGYAFARLQFRGRDALFVLYLGTLMMPLTVTIIPQFILMRVLGWTDTPWAMIVPGLFGSAFG
TYLMRQFFRTLPSDLEEAAILDGCSPWQIYWRVLLPHAKPAVGVLAVLTWVNVWNDFLWPLLMIQRNSLATLTLGLVRMR
GEYGTCWPVIMATSMLIILPLVIIYTIAQRAFVRGITVTRIGG

Sequences:

>Translated_283_residues
MGLAERLNHIVKRSVLRAVVVYIALTGIAWCALFPIVWALSGSLKKEGEIREPTLLPAHPQWSNYTEVFDLIPFWRMFFN
TVLYAGYVTVGQVFFCSLAGYAFARLQFRGRDALFVLYLGTLMMPLTVTIIPQFILMRVLGWTDTPWAMIVPGLFGSAFG
TYLMRQFFRTLPSDLEEAAILDGCSPWQIYWRVLLPHAKPAVGVLAVLTWVNVWNDFLWPLLMIQRNSLATLTLGLVRMR
GEYGTCWPVIMATSMLIILPLVIIYTIAQRAFVRGITVTRIGG
>Mature_282_residues
GLAERLNHIVKRSVLRAVVVYIALTGIAWCALFPIVWALSGSLKKEGEIREPTLLPAHPQWSNYTEVFDLIPFWRMFFNT
VLYAGYVTVGQVFFCSLAGYAFARLQFRGRDALFVLYLGTLMMPLTVTIIPQFILMRVLGWTDTPWAMIVPGLFGSAFGT
YLMRQFFRTLPSDLEEAAILDGCSPWQIYWRVLLPHAKPAVGVLAVLTWVNVWNDFLWPLLMIQRNSLATLTLGLVRMRG
EYGTCWPVIMATSMLIILPLVIIYTIAQRAFVRGITVTRIGG

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789860, Length=261, Percent_Identity=35.632183908046, Blast_Score=135, Evalue=3e-33,
Organism=Escherichia coli, GI1787571, Length=277, Percent_Identity=29.2418772563177, Blast_Score=114, Evalue=9e-27,
Organism=Escherichia coli, GI1790464, Length=270, Percent_Identity=26.2962962962963, Blast_Score=95, Evalue=5e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 32058; Mature: 31927

Theoretical pI: Translated: 9.72; Mature: 9.72

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCC
>Mature Secondary Structure 
GLAERLNHIVKRSVLRAVVVYIALTGIAWCALFPIVWALSGSLKKEGEIREPTLLPAHP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
QWSNYTEVFDLIPFWRMFFNTVLYAGYVTVGQVFFCSLAGYAFARLQFRGRDALFVLYLG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHH
TLMMPLTVTIIPQFILMRVLGWTDTPWAMIVPGLFGSAFGTYLMRQFFRTLPSDLEEAAI
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
LDGCSPWQIYWRVLLPHAKPAVGVLAVLTWVNVWNDFLWPLLMIQRNSLATLTLGLVRMR
HCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHC
GEYGTCWPVIMATSMLIILPLVIIYTIAQRAFVRGITVTRIGG
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9084180; 8969504; 9384377; 10417639 [H]