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The map label for this gene is ycdC [C]

Identifier: 221229836

GI number: 221229836

Start: 963849

End: 964535

Strand: Reverse

Name: ycdC [C]

Synonym: MLBr_00815

Alternate gene names: 221229836

Gene position: 964535-963849 (Counterclockwise)

Preceding gene: 221229840

Following gene: 221229834

Centisome position: 29.51

GC content: 57.06

Gene sequence:

>687_bases
ATGAACAATCTCGCCAAAGCAGCACAGCGGCGTACTGTTAGGCCGATCGACCGCGGTCGACTATCTGATGATATAGCGAC
GCCCAACCAGCGCAGCAACCGATTATCCCGCGACAAGCGTCGTGGCCAATTGCTTATCGTTGCCAGTGACGTCTTTGTCG
ACCACGGCTACCACGCAGCCGGGATGGACGAGATCGCCGATCGGGCAGGAGTCAGCAAACCCGTTCTATATCAACATTTT
TCGAGCAAGCTGGAACTGTATTTGGCGGTGCTTGAGCGGCACATGAACAATCTGGTGTCGAGCGTACAACAGGCTTTGCG
CACGACTACCAACAACCGGCAACGGCTACACGCCGCAGTCCAGGCATTCTTCGACTTCATCGAGCACGACGGGCAAGGCT
ACCGGCTGATCTTCGAGAACGACAATATCACGGAACCTAGGGTTGCCGCACAGGTACGAGTAGCCACCGAATCGTGCATA
GACGCAGTGTTCGCTCTTATCAGCGCGGATTCTAGGTTAGACCCGCACCGCGCCCGGATGGTCGCGGTAGGTCTAGTCGG
TATCAGTGTCGACTGCGCCAGATACTGGTTAGACACCAACCGCCCCATTTCCAAATCAGACGCCGTCGAGGGGACCGTGC
AGTTCGCCTGGGGTGGGCTGTCACATGTGCCGCTTACCCGTTTGTAG

Upstream 100 bases:

>100_bases
AGCCGGCGCTGGTCGGGCAGACAACACGGGTAGTAATGTCATTTTGACGAGCCGGCAGCTGGGCCCGACTGTAATTGGCC
AACGACCAGACAAGGATTCG

Downstream 100 bases:

>100_bases
CTGACTCGGCCCCGATTCCAAAGCCTACCCGGCGAGCGTCGGCGACCCCGATCTCCACATAGGCAATCTTGGCACCGTGT
ATCAGGAAACGACGGCCCCT

Product: putative TetR-family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; TetR-Family Transcriptional Regulator; Transcriptional Regulator; Regulatory Protein TetR; TetR-Type Transcriptional Regulator; TetR/AcrR Family Transcriptional Regulator; Transcriptional Regulatory Protein; TetR-Family Regulatory Protein; Transcriptional Regulator TetR Family Protein; Transcriptional Regulator Tetr Family; Regulatory Protein; Transcriptional Regulator TetR-Family; TetR-Family Protein Regulatory Protein; Transcription Regulator; TetR-Family Transcriptional Regulator Protein; Tetr Family Transcriptional Regulator

Number of amino acids: Translated: 228; Mature: 228

Protein sequence:

>228_residues
MNNLAKAAQRRTVRPIDRGRLSDDIATPNQRSNRLSRDKRRGQLLIVASDVFVDHGYHAAGMDEIADRAGVSKPVLYQHF
SSKLELYLAVLERHMNNLVSSVQQALRTTTNNRQRLHAAVQAFFDFIEHDGQGYRLIFENDNITEPRVAAQVRVATESCI
DAVFALISADSRLDPHRARMVAVGLVGISVDCARYWLDTNRPISKSDAVEGTVQFAWGGLSHVPLTRL

Sequences:

>Translated_228_residues
MNNLAKAAQRRTVRPIDRGRLSDDIATPNQRSNRLSRDKRRGQLLIVASDVFVDHGYHAAGMDEIADRAGVSKPVLYQHF
SSKLELYLAVLERHMNNLVSSVQQALRTTTNNRQRLHAAVQAFFDFIEHDGQGYRLIFENDNITEPRVAAQVRVATESCI
DAVFALISADSRLDPHRARMVAVGLVGISVDCARYWLDTNRPISKSDAVEGTVQFAWGGLSHVPLTRL
>Mature_228_residues
MNNLAKAAQRRTVRPIDRGRLSDDIATPNQRSNRLSRDKRRGQLLIVASDVFVDHGYHAAGMDEIADRAGVSKPVLYQHF
SSKLELYLAVLERHMNNLVSSVQQALRTTTNNRQRLHAAVQAFFDFIEHDGQGYRLIFENDNITEPRVAAQVRVATESCI
DAVFALISADSRLDPHRARMVAVGLVGISVDCARYWLDTNRPISKSDAVEGTVQFAWGGLSHVPLTRL

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25504; Mature: 25504

Theoretical pI: Translated: 9.51; Mature: 9.51

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNLAKAAQRRTVRPIDRGRLSDDIATPNQRSNRLSRDKRRGQLLIVASDVFVDHGYHAA
CCHHHHHHHHCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEHHHHCCCCCCC
GMDEIADRAGVSKPVLYQHFSSKLELYLAVLERHMNNLVSSVQQALRTTTNNRQRLHAAV
CHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
QAFFDFIEHDGQGYRLIFENDNITEPRVAAQVRVATESCIDAVFALISADSRLDPHRARM
HHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
VAVGLVGISVDCARYWLDTNRPISKSDAVEGTVQFAWGGLSHVPLTRL
HHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCEEEEEECCCCCCCCCCC
>Mature Secondary Structure
MNNLAKAAQRRTVRPIDRGRLSDDIATPNQRSNRLSRDKRRGQLLIVASDVFVDHGYHAA
CCHHHHHHHHCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEHHHHCCCCCCC
GMDEIADRAGVSKPVLYQHFSSKLELYLAVLERHMNNLVSSVQQALRTTTNNRQRLHAAV
CHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
QAFFDFIEHDGQGYRLIFENDNITEPRVAAQVRVATESCIDAVFALISADSRLDPHRARM
HHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
VAVGLVGISVDCARYWLDTNRPISKSDAVEGTVQFAWGGLSHVPLTRL
HHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCEEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA