Click here to switch to the map view.

The map label for this gene is rsmB [H]

Identifier: 220919337

GI number: 220919337

Start: 4742678

End: 4743910

Strand: Direct

Name: rsmB [H]

Synonym: A2cp1_4258

Alternate gene names: 220919337

Gene position: 4742678-4743910 (Clockwise)

Preceding gene: 220919332

Following gene: 220919341

Centisome position: 94.3

GC content: 81.83

Gene sequence:

>1233_bases
GTGGCGAGCGTCGCGTGGGAGGCGCTCGACGGCACGGGTCCCGGCCTCGGGCCGGAGCTCGCCGAGGTGCTCGCCGGCGG
CGCCGCGGAGCGGGTCGTGACCCGCGCGCTGCGCGCCCGGCCGGCGCTCGACGCCCAGGGGCGCGCCGCGGTGGCGGAGG
CGATCTTCGGGGTGGGGCTCTGGCGCCGCCGGCTGCGCGCGCAGCTCGGCGATCCGCTGGCGCCGCCGGCGCTGCTGCTC
GCGGCGCTGCTGCGCGACCTGGGTCGCCGCGAGGCGGGCGTCGCCGAGGCGCTCGCGGGCGTCCCCGCGGGCGCGCTCCC
GCCGCCGCGTCCGCCCCCGGCCGCGCGCGCCGACCGGTTCTCCCTGCCCGGCTGGCTCGACGCCGAGCTCGAAGCGGCGG
CCGGCCCGGAGGCGGACGCGCTCGCCGCGGCGCTGTGCCTGCCCGGCCCGGTCGCGCTCCGGGCGAACCGGCTCCGCATC
GAGCCGGCGGCGCTCGCGGCGCGCCTCGGGGCCGAGGGCGTGCGCACCCGGCCCGGCGCGCTCGCGCGCGCGTGCCTCGT
GGTGGAGGGCCCGCGGCCGAACGTGTACGGGCTGCGCGCCTGGCAGGAGGGGCTGCTCGAGGTGCAGGACGAGGGGAGCC
AGGTCCTCGGCGACGCGGTGGGCGCGCGCGCCGGCGAGGCGGTGCTCGACGCCTGCGCCGGGGCCGGCGGGAAGACGCTC
CTGCTCGCCGCGGCGGTGGGACCTGCGGGCCGCGTGCACGCCGTGGATCCCGACGCGGAGCGGCTGGTGCGCCTGCGGAC
CCGCGCGATCGCCGCGGGCGCGGCACGCATCGTGGCGGTGCACGGCGCCGCCGCGCCGGCCGAGCTCCGGGTGGACCGCG
CCCTGGTGGACGCGCCCTGCTCCGAGCTCGGCGCGCTCCGCCGCGGGCCGGACCTGCGCTGGCGGCTCGATCCCGCCGCG
TTCGAGCGGCTGCCCGCGCTGCAGGCGCGGATCCTCGAGCGCGCCGCCGCGCGCGTGCGCCCCGGCGGCCGGCTGGTCTA
CGCGACCTGCACGTTCCGCCGCGCCGAGGACGAGGACGTCGCCGAGGCGTTCGAGGCGGCGCACCCGGAGTTCGCGCGCG
TCGCCCCGGACGCGCCGGCGAGCACGCTGACGAAGGACGGCTTCCTGCGGACCTGGCCGCACCGCGACGGCACCGACGCG
TTCTTCGCGGCGGCGTGGGTGCGGAGGGGATAG

Upstream 100 bases:

>100_bases
GCGGGGTATCCTGCCGCGGACCGCGCCCCCCGGCCCCGCCGACCCCATGCCCGTTCGCAACCCAGCCCTACCGTCCGCGA
CGACCGACGCGGAGCGCCGG

Downstream 100 bases:

>100_bases
CCGCGCGCGCTACCTGGCCTTCGCCGCGCGCGCTGCCAGCAGCTTCGCGCCCCCATGCGCCTCGAGCGCGACCTCCAGCG
CCCGCGCGTAGTCGGGCCGC

Product: Fmu (Sun) domain-containing protein

Products: NA

Alternate protein names: rRNA (cytosine-C(5)-)-methyltransferase rsmB [H]

Number of amino acids: Translated: 410; Mature: 409

Protein sequence:

>410_residues
MASVAWEALDGTGPGLGPELAEVLAGGAAERVVTRALRARPALDAQGRAAVAEAIFGVGLWRRRLRAQLGDPLAPPALLL
AALLRDLGRREAGVAEALAGVPAGALPPPRPPPAARADRFSLPGWLDAELEAAAGPEADALAAALCLPGPVALRANRLRI
EPAALAARLGAEGVRTRPGALARACLVVEGPRPNVYGLRAWQEGLLEVQDEGSQVLGDAVGARAGEAVLDACAGAGGKTL
LLAAAVGPAGRVHAVDPDAERLVRLRTRAIAAGAARIVAVHGAAAPAELRVDRALVDAPCSELGALRRGPDLRWRLDPAA
FERLPALQARILERAAARVRPGGRLVYATCTFRRAEDEDVAEAFEAAHPEFARVAPDAPASTLTKDGFLRTWPHRDGTDA
FFAAAWVRRG

Sequences:

>Translated_410_residues
MASVAWEALDGTGPGLGPELAEVLAGGAAERVVTRALRARPALDAQGRAAVAEAIFGVGLWRRRLRAQLGDPLAPPALLL
AALLRDLGRREAGVAEALAGVPAGALPPPRPPPAARADRFSLPGWLDAELEAAAGPEADALAAALCLPGPVALRANRLRI
EPAALAARLGAEGVRTRPGALARACLVVEGPRPNVYGLRAWQEGLLEVQDEGSQVLGDAVGARAGEAVLDACAGAGGKTL
LLAAAVGPAGRVHAVDPDAERLVRLRTRAIAAGAARIVAVHGAAAPAELRVDRALVDAPCSELGALRRGPDLRWRLDPAA
FERLPALQARILERAAARVRPGGRLVYATCTFRRAEDEDVAEAFEAAHPEFARVAPDAPASTLTKDGFLRTWPHRDGTDA
FFAAAWVRRG
>Mature_409_residues
ASVAWEALDGTGPGLGPELAEVLAGGAAERVVTRALRARPALDAQGRAAVAEAIFGVGLWRRRLRAQLGDPLAPPALLLA
ALLRDLGRREAGVAEALAGVPAGALPPPRPPPAARADRFSLPGWLDAELEAAAGPEADALAAALCLPGPVALRANRLRIE
PAALAARLGAEGVRTRPGALARACLVVEGPRPNVYGLRAWQEGLLEVQDEGSQVLGDAVGARAGEAVLDACAGAGGKTLL
LAAAVGPAGRVHAVDPDAERLVRLRTRAIAAGAARIVAVHGAAAPAELRVDRALVDAPCSELGALRRGPDLRWRLDPAAF
ERLPALQARILERAAARVRPGGRLVYATCTFRRAEDEDVAEAFEAAHPEFARVAPDAPASTLTKDGFLRTWPHRDGTDAF
FAAAWVRRG

Specific function: Unknown

COG id: COG0144

COG function: function code J; tRNA and rRNA cytosine-C5-methylases

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RsmB/NOP family [H]

Homologues:

Organism=Homo sapiens, GI76150625, Length=285, Percent_Identity=27.719298245614, Blast_Score=86, Evalue=6e-17,
Organism=Homo sapiens, GI76150623, Length=285, Percent_Identity=27.719298245614, Blast_Score=86, Evalue=6e-17,
Organism=Homo sapiens, GI11545785, Length=187, Percent_Identity=32.0855614973262, Blast_Score=77, Evalue=3e-14,
Organism=Homo sapiens, GI39995082, Length=260, Percent_Identity=26.9230769230769, Blast_Score=72, Evalue=1e-12,
Organism=Homo sapiens, GI301336155, Length=261, Percent_Identity=27.2030651340996, Blast_Score=72, Evalue=1e-12,
Organism=Homo sapiens, GI32698918, Length=170, Percent_Identity=30.5882352941176, Blast_Score=69, Evalue=6e-12,
Organism=Escherichia coli, GI2367212, Length=298, Percent_Identity=30.2013422818792, Blast_Score=112, Evalue=4e-26,
Organism=Escherichia coli, GI87081985, Length=282, Percent_Identity=28.3687943262411, Blast_Score=92, Evalue=8e-20,
Organism=Caenorhabditis elegans, GI17536757, Length=286, Percent_Identity=27.972027972028, Blast_Score=79, Evalue=6e-15,
Organism=Caenorhabditis elegans, GI25143471, Length=150, Percent_Identity=34, Blast_Score=65, Evalue=5e-11,
Organism=Saccharomyces cerevisiae, GI6324268, Length=289, Percent_Identity=24.9134948096886, Blast_Score=75, Evalue=3e-14,
Organism=Saccharomyces cerevisiae, GI6319447, Length=214, Percent_Identity=29.9065420560748, Blast_Score=68, Evalue=3e-12,
Organism=Drosophila melanogaster, GI21355201, Length=167, Percent_Identity=33.5329341317365, Blast_Score=75, Evalue=7e-14,
Organism=Drosophila melanogaster, GI24668781, Length=176, Percent_Identity=35.7954545454545, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI21356513, Length=176, Percent_Identity=35.7954545454545, Blast_Score=74, Evalue=3e-13,
Organism=Drosophila melanogaster, GI22024126, Length=289, Percent_Identity=24.9134948096886, Blast_Score=68, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001678
- InterPro:   IPR018314
- InterPro:   IPR006027
- InterPro:   IPR004573 [H]

Pfam domain/function: PF01189 Nol1_Nop2_Fmu; PF01029 NusB [H]

EC number: NA

Molecular weight: Translated: 42588; Mature: 42457

Theoretical pI: Translated: 8.51; Mature: 8.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
0.2 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASVAWEALDGTGPGLGPELAEVLAGGAAERVVTRALRARPALDAQGRAAVAEAIFGVGL
CCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
WRRRLRAQLGDPLAPPALLLAALLRDLGRREAGVAEALAGVPAGALPPPRPPPAARADRF
HHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
SLPGWLDAELEAAAGPEADALAAALCLPGPVALRANRLRIEPAALAARLGAEGVRTRPGA
CCCCCCCCCHHHCCCCCHHHHHHHHHCCCCHHCCCCCEEECHHHHHHHHCCCCCCCCCCH
LARACLVVEGPRPNVYGLRAWQEGLLEVQDEGSQVLGDAVGARAGEAVLDACAGAGGKTL
HHEEEEEEECCCCCEEEEHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHCCCCCEE
LLAAAVGPAGRVHAVDPDAERLVRLRTRAIAAGAARIVAVHGAAAPAELRVDRALVDAPC
EEEEECCCCCCEEECCCCHHHHHHHHHHHHHHCCEEEEEEECCCCCHHHHHHHHHHHCCH
SELGALRRGPDLRWRLDPAAFERLPALQARILERAAARVRPGGRLVYATCTFRRAEDEDV
HHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCHHH
AEAFEAAHPEFARVAPDAPASTLTKDGFLRTWPHRDGTDAFFAAAWVRRG
HHHHHHCCCHHHHCCCCCCHHHHCCCCCEEECCCCCCCHHHHHHHHHHCC
>Mature Secondary Structure 
ASVAWEALDGTGPGLGPELAEVLAGGAAERVVTRALRARPALDAQGRAAVAEAIFGVGL
CCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
WRRRLRAQLGDPLAPPALLLAALLRDLGRREAGVAEALAGVPAGALPPPRPPPAARADRF
HHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
SLPGWLDAELEAAAGPEADALAAALCLPGPVALRANRLRIEPAALAARLGAEGVRTRPGA
CCCCCCCCCHHHCCCCCHHHHHHHHHCCCCHHCCCCCEEECHHHHHHHHCCCCCCCCCCH
LARACLVVEGPRPNVYGLRAWQEGLLEVQDEGSQVLGDAVGARAGEAVLDACAGAGGKTL
HHEEEEEEECCCCCEEEEHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHCCCCCEE
LLAAAVGPAGRVHAVDPDAERLVRLRTRAIAAGAARIVAVHGAAAPAELRVDRALVDAPC
EEEEECCCCCCEEECCCCHHHHHHHHHHHHHHCCEEEEEEECCCCCHHHHHHHHHHHCCH
SELGALRRGPDLRWRLDPAAFERLPALQARILERAAARVRPGGRLVYATCTFRRAEDEDV
HHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCHHH
AEAFEAAHPEFARVAPDAPASTLTKDGFLRTWPHRDGTDAFFAAAWVRRG
HHHHHHCCCHHHHCCCCCCHHHHCCCCCEEECCCCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9534248; 9384377; 9086272 [H]