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The map label for this gene is pafB [H]

Identifier: 220919145

GI number: 220919145

Start: 4543060

End: 4544595

Strand: Direct

Name: pafB [H]

Synonym: A2cp1_4065

Alternate gene names: 220919145

Gene position: 4543060-4544595 (Clockwise)

Preceding gene: 220919144

Following gene: 220919146

Centisome position: 90.33

GC content: 78.19

Gene sequence:

>1536_bases
ATGCCGGCCGCGTCCACGCCGCGCCTGATACGCACCCTCGGTCACGCGCTCGTCCGCGGACGCTCCGCGCGGATCCGCGT
CGCGGACGGGCTGCCCGCCGGCGCGGCGCCGCACGGGCCGGTGGACGTGCTCGCGCTCGCGTTCGACGGTGCGTGGCGCG
TGGCCGCCCGGGAGCGCCCCGCCACGCTGCGCGTCCTCGCGCTCGACCGCATCGCCGCAGCCCGCGCGACCTGCCGCCGC
GCCGGCCCACCGCCGCCGGACTTCGACCCGCTCGACTTCACGCGCTGCGCCTGGCTCGACGGGAGCGGCCCGGCCCGCAC
CGTCACCGTGCGGCTCCCCGCCGCGCTCGCCCCGCTCGCGCCGGCGCTGCTGCCCGGCGCCCGCTGCGTCCCCGGATCCG
GGGACGGTGCCGTGCTCTGCCACGTGCGCACCTCGCGCCCGGACCTGCTCTCGGCGCTCACCGCCTCCCTCGGCGCCGGC
CCCGCGCTAGACTGCGAGTCCATGCCGACCGCAACGACCCGGCCGCCCGCGGCCCGGACGAGCGCCCAGGCCCGGCTGCT
CGGCCTCGCCACCTTCATCCTGGCGCAGCCCGGCCCGGTGTCGCGCCGGCGCATCTACGAGGCGTTCCCGGACGACTACG
CCGGGAGCGCCGACGCGAAGGAGAAGAAGTTCTCGCGCGACAAGCGCGACCTCGAGCGGCTCGGCTTCGTGCTCGACCGC
GAGGACGTGCCGGGCGGCGACGACCAGGTCGGCTACTTCATCGACCCGCGCGCCTCGGCGCTGCCGCCGCTGGAGCTCGC
GCCGGAGGAGGCCGCGGTGGTGTGGACCGCGGGCGTGTCGGCGCTGCGCGCCTCGGATCACCCGCTACGCGACGAGCTGG
AGAGCGCGCTGCGCAAGCTCCTGGTGGGCGCGAAGGGGCTCCCGCCGCGCGCCGCGGCCGTGGAGGAGCTGGCGGCGGAC
GGCGCGCCGGCCTCGGGCGCGCTGCTCGACAAGCTGGTGGACGCGTGGGAGCGCCGCCGCACCGTGACGCTCGAGTACCT
GCGCATCGCCACCGGCGAGGTGGTCCGGCGCGACGTGGACGTGTACGGCTGGGGCCGCCGCCGGGGCGAGTGGATCTTCG
CCGGCCACTGCCACCTGCGCGACGCCGAGCGCGTGTTCTACCTCTCGCGCGTGCGCGCGCTGAAGGTGAACGCGCGCCGG
CGCGACCCGTACCGGATCCCGGCGACCTTCGACGTCCGGCGCTGGACCCGCCAGCAGATCTGGGACTACGACGTCCACCC
GCCGCGCGAGGCGGTGATCCGCTTCCGCGGCTCGCTGGCGCGCGTGGCCGGCCAGCTCCTGCCCGCGGCGCGGCTGCGCC
CCGACGCGGAGGGTGGGCGGGTGGCGCGGCTCGAGGTGCGGAACCTGCGCGGCCTGGTGCGCCAGGCGCTGGCCTGGGGT
CCCGAGGCGGAGCTGCTCGAGCCGGCCGAGGGCCGGGCCATGGCGCGCGAGATGCTCGCCACGCTCGCCGCCGCGCTGGA
CGGGAGGTCGCCGTGA

Upstream 100 bases:

>100_bases
CGCGGCGCACCTGCCCGCGATCGACCCCGCGCTCGAGCCGGTGGAGGACGACGTGCCGGCGTAGGCCGGCCCCTGTCCAC
CCGCGCGCGACGATGTCCCC

Downstream 100 bases:

>100_bases
GCGAGCCGTATCTCAGGTCGCTCCGGCGGCTGCTCCTGCTGGTCCCGGTGGCGGTGCGCGCCGCGCGGCAGGGGCGCGGC
GTCCCGCTCGATCGCGCCGT

Product: transcriptional regulator protein-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 511; Mature: 510

Protein sequence:

>511_residues
MPAASTPRLIRTLGHALVRGRSARIRVADGLPAGAAPHGPVDVLALAFDGAWRVAARERPATLRVLALDRIAAARATCRR
AGPPPPDFDPLDFTRCAWLDGSGPARTVTVRLPAALAPLAPALLPGARCVPGSGDGAVLCHVRTSRPDLLSALTASLGAG
PALDCESMPTATTRPPAARTSAQARLLGLATFILAQPGPVSRRRIYEAFPDDYAGSADAKEKKFSRDKRDLERLGFVLDR
EDVPGGDDQVGYFIDPRASALPPLELAPEEAAVVWTAGVSALRASDHPLRDELESALRKLLVGAKGLPPRAAAVEELAAD
GAPASGALLDKLVDAWERRRTVTLEYLRIATGEVVRRDVDVYGWGRRRGEWIFAGHCHLRDAERVFYLSRVRALKVNARR
RDPYRIPATFDVRRWTRQQIWDYDVHPPREAVIRFRGSLARVAGQLLPAARLRPDAEGGRVARLEVRNLRGLVRQALAWG
PEAELLEPAEGRAMAREMLATLAAALDGRSP

Sequences:

>Translated_511_residues
MPAASTPRLIRTLGHALVRGRSARIRVADGLPAGAAPHGPVDVLALAFDGAWRVAARERPATLRVLALDRIAAARATCRR
AGPPPPDFDPLDFTRCAWLDGSGPARTVTVRLPAALAPLAPALLPGARCVPGSGDGAVLCHVRTSRPDLLSALTASLGAG
PALDCESMPTATTRPPAARTSAQARLLGLATFILAQPGPVSRRRIYEAFPDDYAGSADAKEKKFSRDKRDLERLGFVLDR
EDVPGGDDQVGYFIDPRASALPPLELAPEEAAVVWTAGVSALRASDHPLRDELESALRKLLVGAKGLPPRAAAVEELAAD
GAPASGALLDKLVDAWERRRTVTLEYLRIATGEVVRRDVDVYGWGRRRGEWIFAGHCHLRDAERVFYLSRVRALKVNARR
RDPYRIPATFDVRRWTRQQIWDYDVHPPREAVIRFRGSLARVAGQLLPAARLRPDAEGGRVARLEVRNLRGLVRQALAWG
PEAELLEPAEGRAMAREMLATLAAALDGRSP
>Mature_510_residues
PAASTPRLIRTLGHALVRGRSARIRVADGLPAGAAPHGPVDVLALAFDGAWRVAARERPATLRVLALDRIAAARATCRRA
GPPPPDFDPLDFTRCAWLDGSGPARTVTVRLPAALAPLAPALLPGARCVPGSGDGAVLCHVRTSRPDLLSALTASLGAGP
ALDCESMPTATTRPPAARTSAQARLLGLATFILAQPGPVSRRRIYEAFPDDYAGSADAKEKKFSRDKRDLERLGFVLDRE
DVPGGDDQVGYFIDPRASALPPLELAPEEAAVVWTAGVSALRASDHPLRDELESALRKLLVGAKGLPPRAAAVEELAADG
APASGALLDKLVDAWERRRTVTLEYLRIATGEVVRRDVDVYGWGRRRGEWIFAGHCHLRDAERVFYLSRVRALKVNARRR
DPYRIPATFDVRRWTRQQIWDYDVHPPREAVIRFRGSLARVAGQLLPAARLRPDAEGGRVARLEVRNLRGLVRQALAWGP
EAELLEPAEGRAMAREMLATLAAALDGRSP

Specific function: Does not seem to be involved in pupylation or substrate degradation [H]

COG id: COG2378

COG function: function code K; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the pafB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 55334; Mature: 55203

Theoretical pI: Translated: 10.50; Mature: 10.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPAASTPRLIRTLGHALVRGRSARIRVADGLPAGAAPHGPVDVLALAFDGAWRVAARERP
CCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCEEEEEEECCCEEECCCCCC
ATLRVLALDRIAAARATCRRAGPPPPDFDPLDFTRCAWLDGSGPARTVTVRLPAALAPLA
CEEEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEECCHHHHHHH
PALLPGARCVPGSGDGAVLCHVRTSRPDLLSALTASLGAGPALDCESMPTATTRPPAART
HHHCCCCEECCCCCCCEEEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHH
SAQARLLGLATFILAQPGPVSRRRIYEAFPDDYAGSADAKEKKFSRDKRDLERLGFVLDR
HHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEC
EDVPGGDDQVGYFIDPRASALPPLELAPEEAAVVWTAGVSALRASDHPLRDELESALRKL
CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCEEEEECCHHHHHCCCCCHHHHHHHHHHHH
LVGAKGLPPRAAAVEELAADGAPASGALLDKLVDAWERRRTVTLEYLRIATGEVVRRDVD
HHCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHCCC
VYGWGRRRGEWIFAGHCHLRDAERVFYLSRVRALKVNARRRDPYRIPATFDVRRWTRQQI
EEECCCCCCCEEEEECCCCCCHHHHHHHHHHHHEEECCCCCCCEECCCEEHHHHHHHHHH
WDYDVHPPREAVIRFRGSLARVAGQLLPAARLRPDAEGGRVARLEVRNLRGLVRQALAWG
CCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCEEEEEEHHHHHHHHHHHHHCC
PEAELLEPAEGRAMAREMLATLAAALDGRSP
CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
PAASTPRLIRTLGHALVRGRSARIRVADGLPAGAAPHGPVDVLALAFDGAWRVAARERP
CCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCEEEEEEECCCEEECCCCCC
ATLRVLALDRIAAARATCRRAGPPPPDFDPLDFTRCAWLDGSGPARTVTVRLPAALAPLA
CEEEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEECCHHHHHHH
PALLPGARCVPGSGDGAVLCHVRTSRPDLLSALTASLGAGPALDCESMPTATTRPPAART
HHHCCCCEECCCCCCCEEEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHH
SAQARLLGLATFILAQPGPVSRRRIYEAFPDDYAGSADAKEKKFSRDKRDLERLGFVLDR
HHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEC
EDVPGGDDQVGYFIDPRASALPPLELAPEEAAVVWTAGVSALRASDHPLRDELESALRKL
CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCEEEEECCHHHHHCCCCCHHHHHHHHHHHH
LVGAKGLPPRAAAVEELAADGAPASGALLDKLVDAWERRRTVTLEYLRIATGEVVRRDVD
HHCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHCCC
VYGWGRRRGEWIFAGHCHLRDAERVFYLSRVRALKVNARRRDPYRIPATFDVRRWTRQQI
EEECCCCCCCEEEEECCCCCCHHHHHHHHHHHHEEECCCCCCCEECCCEEHHHHHHHHHH
WDYDVHPPREAVIRFRGSLARVAGQLLPAARLRPDAEGGRVARLEVRNLRGLVRQALAWG
CCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCEEEEEEHHHHHHHHHHHHHCC
PEAELLEPAEGRAMAREMLATLAAALDGRSP
CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11234002 [H]