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The map label for this gene is cydB [H]

Identifier: 220918957

GI number: 220918957

Start: 4310004

End: 4311050

Strand: Direct

Name: cydB [H]

Synonym: A2cp1_3872

Alternate gene names: 220918957

Gene position: 4310004-4311050 (Clockwise)

Preceding gene: 220918956

Following gene: 220918958

Centisome position: 85.7

GC content: 72.4

Gene sequence:

>1047_bases
ATGGATCTCAACGTCATCTGGTTCGTGCTGGTGGGCGTCCTCATCGCCGGCTACGCGGTGCTCGACGGGTTCGACCTCGG
CGTGGGCGTGCTGTCGCTGTTCGCCCGCGACGAGGAGGAGCGGCAGGTACACCTGAAGGCCATCGGCCCGGTGTGGGACG
GGAACGAGGTGTGGCTGCTCACCGGCGGCGGCGCGCTGTTCGCGGCGTTCCCGGTCGTCTACGCCACGGTGTTCAGCGGG
TTCTACCTCGCGCTCATGCTGCTCCTGCTCGCGCTCATCGCCCGCGCGGTCGCGCTCGAGTTCCGCGCGCAGCTCGACGG
GGCGGCCTGGCGGCGCGGCTTCGACCTCGCGTTCGGCATCGGCAGCCTGCTCCCGGCGGTGCTGCTGGGCGTGGCGGTCG
GCAACGTCCTGCGCGGCGTCCCGGTGACCGCCGAGCAGGAGTGGGCGGGCAGCTTCCTCGGGCTGCTCCACCCGTACGCG
GTGCTGGTGGGGCTCGTCTCCCTCTCGATGTTCGCGATGCACGGCGCGCTCTGGCTGCGCCTGAAGGCGGAGGGCGCGCT
CGAGGCGCGGATGGCCCGCTGGATCCCGCGGCTGTGGGGCGCGTTCGTCGCCACCTACGCGATCGCCACCGCGGCGTCGC
TGGTCGAGGCGCCGCACCTGTTCGCCGGCGTGCTCGCGAACCCGCTCTTCCTCGCGCTGGCCGTGCTGGTGGTCGCGTCG
ATCGCCGCCATCCCGGCGCTGAGCCGCCGCGGCGCCGCCGGCAAGGCGTTCCTCGCCTCGTCCGTCGCGATCGTCGCGAT
GATCCTGGTGGCGGCGGTCTCGATGTTCCCGCGGCTCGTGCCCTCCTCGATCGACCTCGCGAACAGCCTCACCATCTACA
ACGCGTCCTCCTCCCCCCGGACGCTCGCGGTCATGCTGGTGATCGCGCTGGTCGGGATGCCGCTCGTGATCGGCTACACC
GTGCTCGTCTATCGCGTGTTCCGCGGCAAGGTCCGCCCCGGGACCGGCGGCCACTACGGGGAGCCGGCCCGCGCGATCCA
GCCCTAG

Upstream 100 bases:

>100_bases
GGCGCGCTGTGGCTGACCCTGATGGTGAAGAAGGCGCGCGTCGCGCCGCGCCTCCCCGCCGCCGAGCGCGCGCGGGCCGC
CGCCTGAGAGGAGACCGACC

Downstream 100 bases:

>100_bases
GGGCCGTCCCCGCCCCGAAGGTCCGGCGCCCCCCTTCCGCCGGTCCCCGCCGCCTCGTCAACCGTGACCTCCGGGTACGG
TTGACGAGGCGGTCCTCGCT

Product: cytochrome d ubiquinol oxidase, subunit II

Products: NA

Alternate protein names: Cytochrome bd-I oxidase subunit II; Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 348; Mature: 348

Protein sequence:

>348_residues
MDLNVIWFVLVGVLIAGYAVLDGFDLGVGVLSLFARDEEERQVHLKAIGPVWDGNEVWLLTGGGALFAAFPVVYATVFSG
FYLALMLLLLALIARAVALEFRAQLDGAAWRRGFDLAFGIGSLLPAVLLGVAVGNVLRGVPVTAEQEWAGSFLGLLHPYA
VLVGLVSLSMFAMHGALWLRLKAEGALEARMARWIPRLWGAFVATYAIATAASLVEAPHLFAGVLANPLFLALAVLVVAS
IAAIPALSRRGAAGKAFLASSVAIVAMILVAAVSMFPRLVPSSIDLANSLTIYNASSSPRTLAVMLVIALVGMPLVIGYT
VLVYRVFRGKVRPGTGGHYGEPARAIQP

Sequences:

>Translated_348_residues
MDLNVIWFVLVGVLIAGYAVLDGFDLGVGVLSLFARDEEERQVHLKAIGPVWDGNEVWLLTGGGALFAAFPVVYATVFSG
FYLALMLLLLALIARAVALEFRAQLDGAAWRRGFDLAFGIGSLLPAVLLGVAVGNVLRGVPVTAEQEWAGSFLGLLHPYA
VLVGLVSLSMFAMHGALWLRLKAEGALEARMARWIPRLWGAFVATYAIATAASLVEAPHLFAGVLANPLFLALAVLVVAS
IAAIPALSRRGAAGKAFLASSVAIVAMILVAAVSMFPRLVPSSIDLANSLTIYNASSSPRTLAVMLVIALVGMPLVIGYT
VLVYRVFRGKVRPGTGGHYGEPARAIQP
>Mature_348_residues
MDLNVIWFVLVGVLIAGYAVLDGFDLGVGVLSLFARDEEERQVHLKAIGPVWDGNEVWLLTGGGALFAAFPVVYATVFSG
FYLALMLLLLALIARAVALEFRAQLDGAAWRRGFDLAFGIGSLLPAVLLGVAVGNVLRGVPVTAEQEWAGSFLGLLHPYA
VLVGLVSLSMFAMHGALWLRLKAEGALEARMARWIPRLWGAFVATYAIATAASLVEAPHLFAGVLANPLFLALAVLVVAS
IAAIPALSRRGAAGKAFLASSVAIVAMILVAAVSMFPRLVPSSIDLANSLTIYNASSSPRTLAVMLVIALVGMPLVIGYT
VLVYRVFRGKVRPGTGGHYGEPARAIQP

Specific function: Cytochrome d terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at low aeration [H]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli AppB [H]

Homologues:

Organism=Escherichia coli, GI1786954, Length=360, Percent_Identity=37.2222222222222, Blast_Score=219, Evalue=3e-58,
Organism=Escherichia coli, GI1787213, Length=376, Percent_Identity=35.9042553191489, Blast_Score=212, Evalue=3e-56,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 36731; Mature: 36731

Theoretical pI: Translated: 9.74; Mature: 9.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLNVIWFVLVGVLIAGYAVLDGFDLGVGVLSLFARDEEERQVHLKAIGPVWDGNEVWLL
CCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHEEEHEEECCEECCCEEEEE
TGGGALFAAFPVVYATVFSGFYLALMLLLLALIARAVALEFRAQLDGAAWRRGFDLAFGI
ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCHHHHHH
GSLLPAVLLGVAVGNVLRGVPVTAEQEWAGSFLGLLHPYAVLVGLVSLSMFAMHGALWLR
HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEE
LKAEGALEARMARWIPRLWGAFVATYAIATAASLVEAPHLFAGVLANPLFLALAVLVVAS
EECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IAAIPALSRRGAAGKAFLASSVAIVAMILVAAVSMFPRLVPSSIDLANSLTIYNASSSPR
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCHHCCEEEEECCCCCH
TLAVMLVIALVGMPLVIGYTVLVYRVFRGKVRPGTGGHYGEPARAIQP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MDLNVIWFVLVGVLIAGYAVLDGFDLGVGVLSLFARDEEERQVHLKAIGPVWDGNEVWLL
CCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHEEEHEEECCEECCCEEEEE
TGGGALFAAFPVVYATVFSGFYLALMLLLLALIARAVALEFRAQLDGAAWRRGFDLAFGI
ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCHHHHHH
GSLLPAVLLGVAVGNVLRGVPVTAEQEWAGSFLGLLHPYAVLVGLVSLSMFAMHGALWLR
HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEE
LKAEGALEARMARWIPRLWGAFVATYAIATAASLVEAPHLFAGVLANPLFLALAVLVVAS
EECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IAAIPALSRRGAAGKAFLASSVAIVAMILVAAVSMFPRLVPSSIDLANSLTIYNASSSPR
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCHHCCEEEEECCCCCH
TLAVMLVIALVGMPLVIGYTVLVYRVFRGKVRPGTGGHYGEPARAIQP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]