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The map label for this gene is cydA [H]

Identifier: 220918956

GI number: 220918956

Start: 4308650

End: 4309990

Strand: Direct

Name: cydA [H]

Synonym: A2cp1_3871

Alternate gene names: 220918956

Gene position: 4308650-4309990 (Clockwise)

Preceding gene: 220918955

Following gene: 220918957

Centisome position: 85.67

GC content: 70.99

Gene sequence:

>1341_bases
ATGGACGCACTCACGCTCGCGCGGCTCCAGTTCGCGGTGACCGCCGGGTTCCACTTCCTGTTCCCGCCCATCACCATCGG
CCTGGGCTGGCTGCTCGTCCTGGCCGAGTGGTTCGGCTGGAAGCACCAGGACGCGGTCTACGTCGAGGTGGCGAAGTTCT
TCGGCAGGCTGTTCGCCATCACCTTCGCGGTCGGCGTGGCCACCGGCATCGTGATGGAGTTCCAGTTCGGCACGAACTGG
TCGGCGTACTCGAAGTTCGTGGGCGACATCTTCGGCGCCCCGCTCGCCGCGGAGGGCGTGTTTGCGTTCTTCCTCGAATC
CACCTTCCTCGGGCTCTACCTGTGGGGCCGCGGGCGGGTCTCGAAGGGCCTGCACTGGTTCTCGGCGCTCATGGTCGCGG
TGGGCGCCACGCTGTCGGCGTTCTGGATCATCGTCGCGAACTCCTGGCAGCAGACGCCCACCGGCTACGTGGTCCGGAAC
GGCCGCGCCGAGCTGGTGGACTTCTGGGCCGCGGTCTGGAACCCGTCCACGCTCCCGCGCTACTTCCACACCGTGGTGGG
CGCGCTGGTGGTGGGCGCGTTCGTGATGGCCGGCGTGGCCGCCTGGCACCTGCTCCGCGACGCCGAGTCGGCGTTCGCGC
GCAAGGCCCTGAAGCTCGCGGTGGCGTGGGGCCTCCTCGTCTCCTGCCTGGAGGTGATGCCGTTCGGCCACCTCCACGCG
CAGCAGGTGGCGCGCACGCAGCCGGAGAAGTTCGCGGCCATCGAGGGGCTCTACACCAGCCAGACCGGCGCGCCGCTGGT
GCTGTTCGCGGTGCCGTTCTCCGAGCCGCCGCGGCTGAAGGGCACGCTCGAGATCCCGGGGCTCCTCTCCTGGATGGCGT
TCGGCGACACCGGCGCCCACGTGCAGGGCCTCGACCAGTTCCCGCCCGCGAACCGGCCGCCGCTGTGGCTCACGTTCGTC
TCGTTCCACAACATGGTGCTGCTGGGCGTCTGGTTCATCGCCATCATGGCCTGGTCCGCCTGGCAGTGGTACCGCGGGCG
CCTGTGGACCGACCGCTTCACGCTGCGTGCGCTGGTCTGGTCCATCCCGCTGCCCATCGTGGCCTGCCAGCTCGGCTGGG
TGGCCGCCGAGGTCGGGCGGCAGCCCTGGATCGTCTACGGCCTGCTGCGCACCGGCCAGGCCCACTCGCCGACGGTGACC
GCCGCCGAGATCGCGTTCTCGCTCGGCCTGTTCGGCCTGGTGTACCTGGCGCTGGGCGCGCTGTGGCTGACCCTGATGGT
GAAGAAGGCGCGCGTCGCGCCGCGCCTCCCCGCCGCCGAGCGCGCGCGGGCCGCCGCCTGA

Upstream 100 bases:

>100_bases
GTGGCACCCCGGTTGCTGAAGCGGGCCCCGGCGCCCGCGCGGCGGGCCGCGGCGATCCACGGTGGACGCCCCGGGCCGCG
CGCCGGCGAAGGAGGCCCCC

Downstream 100 bases:

>100_bases
GAGGAGACCGACCATGGATCTCAACGTCATCTGGTTCGTGCTGGTGGGCGTCCTCATCGCCGGCTACGCGGTGCTCGACG
GGTTCGACCTCGGCGTGGGC

Product: cytochrome bd ubiquinol oxidase subunit I

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 446; Mature: 446

Protein sequence:

>446_residues
MDALTLARLQFAVTAGFHFLFPPITIGLGWLLVLAEWFGWKHQDAVYVEVAKFFGRLFAITFAVGVATGIVMEFQFGTNW
SAYSKFVGDIFGAPLAAEGVFAFFLESTFLGLYLWGRGRVSKGLHWFSALMVAVGATLSAFWIIVANSWQQTPTGYVVRN
GRAELVDFWAAVWNPSTLPRYFHTVVGALVVGAFVMAGVAAWHLLRDAESAFARKALKLAVAWGLLVSCLEVMPFGHLHA
QQVARTQPEKFAAIEGLYTSQTGAPLVLFAVPFSEPPRLKGTLEIPGLLSWMAFGDTGAHVQGLDQFPPANRPPLWLTFV
SFHNMVLLGVWFIAIMAWSAWQWYRGRLWTDRFTLRALVWSIPLPIVACQLGWVAAEVGRQPWIVYGLLRTGQAHSPTVT
AAEIAFSLGLFGLVYLALGALWLTLMVKKARVAPRLPAAERARAAA

Sequences:

>Translated_446_residues
MDALTLARLQFAVTAGFHFLFPPITIGLGWLLVLAEWFGWKHQDAVYVEVAKFFGRLFAITFAVGVATGIVMEFQFGTNW
SAYSKFVGDIFGAPLAAEGVFAFFLESTFLGLYLWGRGRVSKGLHWFSALMVAVGATLSAFWIIVANSWQQTPTGYVVRN
GRAELVDFWAAVWNPSTLPRYFHTVVGALVVGAFVMAGVAAWHLLRDAESAFARKALKLAVAWGLLVSCLEVMPFGHLHA
QQVARTQPEKFAAIEGLYTSQTGAPLVLFAVPFSEPPRLKGTLEIPGLLSWMAFGDTGAHVQGLDQFPPANRPPLWLTFV
SFHNMVLLGVWFIAIMAWSAWQWYRGRLWTDRFTLRALVWSIPLPIVACQLGWVAAEVGRQPWIVYGLLRTGQAHSPTVT
AAEIAFSLGLFGLVYLALGALWLTLMVKKARVAPRLPAAERARAAA
>Mature_446_residues
MDALTLARLQFAVTAGFHFLFPPITIGLGWLLVLAEWFGWKHQDAVYVEVAKFFGRLFAITFAVGVATGIVMEFQFGTNW
SAYSKFVGDIFGAPLAAEGVFAFFLESTFLGLYLWGRGRVSKGLHWFSALMVAVGATLSAFWIIVANSWQQTPTGYVVRN
GRAELVDFWAAVWNPSTLPRYFHTVVGALVVGAFVMAGVAAWHLLRDAESAFARKALKLAVAWGLLVSCLEVMPFGHLHA
QQVARTQPEKFAAIEGLYTSQTGAPLVLFAVPFSEPPRLKGTLEIPGLLSWMAFGDTGAHVQGLDQFPPANRPPLWLTFV
SFHNMVLLGVWFIAIMAWSAWQWYRGRLWTDRFTLRALVWSIPLPIVACQLGWVAAEVGRQPWIVYGLLRTGQAHSPTVT
AAEIAFSLGLFGLVYLALGALWLTLMVKKARVAPRLPAAERARAAA

Specific function: Cytochrome D Terminal Oxidase Complex Is The Component Of The Aerobic Respiratory Chain Of E.Coli That Predominates When Cells Are Grown At Low Aeration. [C]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI87081779, Length=504, Percent_Identity=35.1190476190476, Blast_Score=277, Evalue=1e-75,
Organism=Escherichia coli, GI1787212, Length=508, Percent_Identity=35.2362204724409, Blast_Score=260, Evalue=1e-70,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 49160; Mature: 49160

Theoretical pI: Translated: 10.08; Mature: 10.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDALTLARLQFAVTAGFHFLFPPITIGLGWLLVLAEWFGWKHQDAVYVEVAKFFGRLFAI
CCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
TFAVGVATGIVMEFQFGTNWSAYSKFVGDIFGAPLAAEGVFAFFLESTFLGLYLWGRGRV
HHHHHHHHHEEEEEEECCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHEEEECCCCH
SKGLHWFSALMVAVGATLSAFWIIVANSWQQTPTGYVVRNGRAELVDFWAAVWNPSTLPR
HHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCEEEECCCHHHHHHHHHHCCCCCHHH
YFHTVVGALVVGAFVMAGVAAWHLLRDAESAFARKALKLAVAWGLLVSCLEVMPFGHLHA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
QQVARTQPEKFAAIEGLYTSQTGAPLVLFAVPFSEPPRLKGTLEIPGLLSWMAFGDTGAH
HHHHHCCCHHHHHHHCCEECCCCCCEEEEEECCCCCCCCCEEEECCHHHHHHHCCCCCCC
VQGLDQFPPANRPPLWLTFVSFHNMVLLGVWFIAIMAWSAWQWYRGRLWTDRFTLRALVW
CCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
SIPLPIVACQLGWVAAEVGRQPWIVYGLLRTGQAHSPTVTAAEIAFSLGLFGLVYLALGA
HCCHHHHHHHHHHHHHHHCCCCEEEEEEHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
LWLTLMVKKARVAPRLPAAERARAAA
HHHHHHHHHHHCCCCCCCHHHHHCCC
>Mature Secondary Structure
MDALTLARLQFAVTAGFHFLFPPITIGLGWLLVLAEWFGWKHQDAVYVEVAKFFGRLFAI
CCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
TFAVGVATGIVMEFQFGTNWSAYSKFVGDIFGAPLAAEGVFAFFLESTFLGLYLWGRGRV
HHHHHHHHHEEEEEEECCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHEEEECCCCH
SKGLHWFSALMVAVGATLSAFWIIVANSWQQTPTGYVVRNGRAELVDFWAAVWNPSTLPR
HHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCEEEECCCHHHHHHHHHHCCCCCHHH
YFHTVVGALVVGAFVMAGVAAWHLLRDAESAFARKALKLAVAWGLLVSCLEVMPFGHLHA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
QQVARTQPEKFAAIEGLYTSQTGAPLVLFAVPFSEPPRLKGTLEIPGLLSWMAFGDTGAH
HHHHHCCCHHHHHHHCCEECCCCCCEEEEEECCCCCCCCCEEEECCHHHHHHHCCCCCCC
VQGLDQFPPANRPPLWLTFVSFHNMVLLGVWFIAIMAWSAWQWYRGRLWTDRFTLRALVW
CCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
SIPLPIVACQLGWVAAEVGRQPWIVYGLLRTGQAHSPTVTAAEIAFSLGLFGLVYLALGA
HCCHHHHHHHHHHHHHHHCCCCEEEEEEHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
LWLTLMVKKARVAPRLPAAERARAAA
HHHHHHHHHHHCCCCCCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]