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The map label for this gene is ycfQ [H]

Identifier: 220918426

GI number: 220918426

Start: 3709080

End: 3709739

Strand: Reverse

Name: ycfQ [H]

Synonym: A2cp1_3330

Alternate gene names: 220918426

Gene position: 3709739-3709080 (Counterclockwise)

Preceding gene: 220918433

Following gene: 220918424

Centisome position: 73.76

GC content: 77.58

Gene sequence:

>660_bases
ATGGGCACGCGCGGGCGGCCTCGCTCGTTCGACCGGGGCGAGGCGCTGCAGAAGGCGATGGAGGTGTTCTGGGATCGCGG
GTACGACGGCGCCTCCATGGCGGACCTCACCCGCGCCATGGGGATCAACTCGCCCAGCCTCTACGCGGCGTTCGGGAGCA
AGGCGGCGCTGTTCCGGGAGGCGCTGGACCTGTACGCGGCCACCGAGGGCGCGGGCGGGCGGTGCGCGCTGGACGAGGGC
ACCGCGCGGGAGGCCCTCCGCGGCATGCTTCGCGCGACGGTGGAGGGGCTCACGGCGGCGGGGAAGCCACGCGGCTGCAT
GATCGTGCTGGGCGCATGCCAGGGCGGCGCAGACGGCGACGGTGCGGCGCTGGACGCGCTGCTGCGGGCGCGCCGCGCCC
GGGCGGTCGAGGACGTGCGCCGGAGGCTCCGCCGCGGCGTCGACGAGGGTGACCTTCCGCCAGGGGCCGACGTGGAGGCG
CTCACCGCGTTCTACGCCACCGTGCTGCAGGGGCTCTCGCTCCGGGCGCGCGACGGCGCCTCGCGCGCCGAGCTGCTCGG
GATCGTCGAGTCCGCCATGGCGGCGTGGGACGCGCTGCTGCGCCCAGCCGCCCCGCGTCGTGGCGCCGCGCGCGGCCGCC
GCACGCACGCCGCCCGCTGA

Upstream 100 bases:

>100_bases
TGGTTGCTCCCGTTCTGTATTGAACGACATAGAAAGCCTACGGCGCTTGCCAGGGAGCCGCCCGACTTTCTATGCTGTAC
GACACAGAAAGGGGGCCGGC

Downstream 100 bases:

>100_bases
CGCCGGCCGGCTCGGTGCACCTGGCGCGACGAACGGGCGGGCGCCGAGCGGCCCGGATGCGTCCCGGGCCGCGGCCGCTC
ACCCGCGGGGCTTGCCCTCG

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 219; Mature: 218

Protein sequence:

>219_residues
MGTRGRPRSFDRGEALQKAMEVFWDRGYDGASMADLTRAMGINSPSLYAAFGSKAALFREALDLYAATEGAGGRCALDEG
TAREALRGMLRATVEGLTAAGKPRGCMIVLGACQGGADGDGAALDALLRARRARAVEDVRRRLRRGVDEGDLPPGADVEA
LTAFYATVLQGLSLRARDGASRAELLGIVESAMAAWDALLRPAAPRRGAARGRRTHAAR

Sequences:

>Translated_219_residues
MGTRGRPRSFDRGEALQKAMEVFWDRGYDGASMADLTRAMGINSPSLYAAFGSKAALFREALDLYAATEGAGGRCALDEG
TAREALRGMLRATVEGLTAAGKPRGCMIVLGACQGGADGDGAALDALLRARRARAVEDVRRRLRRGVDEGDLPPGADVEA
LTAFYATVLQGLSLRARDGASRAELLGIVESAMAAWDALLRPAAPRRGAARGRRTHAAR
>Mature_218_residues
GTRGRPRSFDRGEALQKAMEVFWDRGYDGASMADLTRAMGINSPSLYAAFGSKAALFREALDLYAATEGAGGRCALDEGT
AREALRGMLRATVEGLTAAGKPRGCMIVLGACQGGADGDGAALDALLRARRARAVEDVRRRLRRGVDEGDLPPGADVEAL
TAFYATVLQGLSLRARDGASRAELLGIVESAMAAWDALLRPAAPRRGAARGRRTHAAR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081833, Length=204, Percent_Identity=35.7843137254902, Blast_Score=125, Evalue=3e-30,
Organism=Escherichia coli, GI87082397, Length=201, Percent_Identity=32.8358208955224, Blast_Score=85, Evalue=4e-18,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 23104; Mature: 22972

Theoretical pI: Translated: 10.22; Mature: 10.22

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGTRGRPRSFDRGEALQKAMEVFWDRGYDGASMADLTRAMGINSPSLYAAFGSKAALFRE
CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHCCHHHHHHH
ALDLYAATEGAGGRCALDEGTAREALRGMLRATVEGLTAAGKPRGCMIVLGACQGGADGD
HHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCC
GAALDALLRARRARAVEDVRRRLRRGVDEGDLPPGADVEALTAFYATVLQGLSLRARDGA
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC
SRAELLGIVESAMAAWDALLRPAAPRRGAARGRRTHAAR
HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCHHCCCC
>Mature Secondary Structure 
GTRGRPRSFDRGEALQKAMEVFWDRGYDGASMADLTRAMGINSPSLYAAFGSKAALFRE
CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHCCHHHHHHH
ALDLYAATEGAGGRCALDEGTAREALRGMLRATVEGLTAAGKPRGCMIVLGACQGGADGD
HHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCC
GAALDALLRARRARAVEDVRRRLRRGVDEGDLPPGADVEALTAFYATVLQGLSLRARDGA
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC
SRAELLGIVESAMAAWDALLRPAAPRRGAARGRRTHAAR
HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]