Click here to switch to the map view.

The map label for this gene is yfjD [C]

Identifier: 220917418

GI number: 220917418

Start: 2569201

End: 2570595

Strand: Reverse

Name: yfjD [C]

Synonym: A2cp1_2318

Alternate gene names: 220917418

Gene position: 2570595-2569201 (Counterclockwise)

Preceding gene: 220917419

Following gene: 220917417

Centisome position: 51.11

GC content: 73.41

Gene sequence:

>1395_bases
TTGGACGCAGTACCGACATGGAAATGGTTGCTGGGGGTGGCGTTCCTCGCCGCCTCCGCCTTCTGCTCGGGGACCGAGAC
CGCGCTGACCGCGCTGGGCGAGCCCCGCGCCCGGCAGCTCCGCGAGACGGGCGGCCGGCGGGCCCGCCTGCTGGGCCTGT
GGATCGATCACCCGGAGCGCGTCCTCTCGACGCTGCTCATCGGCAACACGCTCGTGAACGTGGGCGCGGGCGCGCTGGCC
GGCTCGGTGGGCGCGGACCTCGCCGGCGGGGGCGGCTGGGCCCCCGGGACGCTGGTCGCCATCGCCACCGGCGTCACCAC
CGTGGTGATCCTGTTCGCGGGCGAGATCGTCCCGAAGACCATCGGCAAGCGGCACCCGGCGCCGGTCGCGCTCTGGGCCA
TGCCCATGGTCCAGGCCCTCTGCCTGGCGATGTGGCCGCTCTCCGCGGCGGTGACCCGGCTCACCGGGTGGGTGGTGGGG
CGGCTCGGCGGCGGCAGGGCGCCCACGCCCGCGGTGACGAGCGAGGAGATCGAGTACCTCATCGAGATGGGCACGCGCGA
GGGCGTGCTCGACGAGGTGAAGGAGGAGCTGCTCAACAGCGTGCTCGAGTTCGCCGACCGCGTGGCGAAGGAGGTCATGA
TCCCGCGCACGCGCATGGTCGCCGTGGACCGCGCGGTGGAGCCGGACGAGCTGGTGCGGATCGTCACCGAGAACCCGTAC
AGCCGCATGCCGGTGTACGAGGGCTCGATCGACAACGTGGTGGGCATCCTGCTGGTCCGCGACATCATCCAGGAGCTCCG
GCACGGGCCGCTGCGGCGCATCGCGCTGGACCGGTACCTGAAGCCGGCCTTCTTCGTCCCCGAGCAGATGAAGATCTCGC
GGCTGCTGAAGGAGATGCAGCGGCGACGGACGCACCTCGCGGTGGTGGTGGACGAGTTCGGCGGCACGAGCGGCCTCGTC
ACCATGGAGGACGTCATCGAGGAGATCGTCGGCGAGATCCAGGACGAGGCCGACGTGGAGTCCGCGCCGGTGAAGGCGGT
CGCGCCGGGCGTGTGGCTGGCCGACGCTGCCATCCCGCTCCACGACCTGCAGTCCTTCCTGAACGAGCAGCGCGAGGAGC
CCGCGCCGCGTCCCGCCGGCGACGACGCGCCCGAGCCCGAGGACGGCGAGCCGCCGCCCGAGATCCGCTTCCCCGAGCAG
GGGGACTACGAGACGCTGGGCGGCTTCGTGACCGCGACCGCAGGCCGGGTCCCGCCGGTGGGCGCCACGCTGGCGTGGGA
CGGCCTCACGTTCACCGTGCGCGCCGGCGACGAGCGGCGCGTCACCCGGGTCGAGATCGCGCGGCGGGGCGAGGTGGCCG
CACCCGAGGTCGCGCCGGCCGCGGCCCGGTCTTAG

Upstream 100 bases:

>100_bases
GGCCGGGCGCGCCGCGCCCGGTTCGGGCTACAATGCACGAACCCGTCCCGCCCCAGGGACGGGTTTCGTCGTTTCAGGGG
AAGGCGAGGAGAGCCGCAGT

Downstream 100 bases:

>100_bases
GAACAGGCGCGCATGGACGTCCTGCACGACGACACGCCCGACCTCCGGTCGCTCCCGCAGGAGCGGCTCGCCGCCCTGAT
CGCCGGCCTGGGCGAGAAGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 464; Mature: 464

Protein sequence:

>464_residues
MDAVPTWKWLLGVAFLAASAFCSGTETALTALGEPRARQLRETGGRRARLLGLWIDHPERVLSTLLIGNTLVNVGAGALA
GSVGADLAGGGGWAPGTLVAIATGVTTVVILFAGEIVPKTIGKRHPAPVALWAMPMVQALCLAMWPLSAAVTRLTGWVVG
RLGGGRAPTPAVTSEEIEYLIEMGTREGVLDEVKEELLNSVLEFADRVAKEVMIPRTRMVAVDRAVEPDELVRIVTENPY
SRMPVYEGSIDNVVGILLVRDIIQELRHGPLRRIALDRYLKPAFFVPEQMKISRLLKEMQRRRTHLAVVVDEFGGTSGLV
TMEDVIEEIVGEIQDEADVESAPVKAVAPGVWLADAAIPLHDLQSFLNEQREEPAPRPAGDDAPEPEDGEPPPEIRFPEQ
GDYETLGGFVTATAGRVPPVGATLAWDGLTFTVRAGDERRVTRVEIARRGEVAAPEVAPAAARS

Sequences:

>Translated_464_residues
MDAVPTWKWLLGVAFLAASAFCSGTETALTALGEPRARQLRETGGRRARLLGLWIDHPERVLSTLLIGNTLVNVGAGALA
GSVGADLAGGGGWAPGTLVAIATGVTTVVILFAGEIVPKTIGKRHPAPVALWAMPMVQALCLAMWPLSAAVTRLTGWVVG
RLGGGRAPTPAVTSEEIEYLIEMGTREGVLDEVKEELLNSVLEFADRVAKEVMIPRTRMVAVDRAVEPDELVRIVTENPY
SRMPVYEGSIDNVVGILLVRDIIQELRHGPLRRIALDRYLKPAFFVPEQMKISRLLKEMQRRRTHLAVVVDEFGGTSGLV
TMEDVIEEIVGEIQDEADVESAPVKAVAPGVWLADAAIPLHDLQSFLNEQREEPAPRPAGDDAPEPEDGEPPPEIRFPEQ
GDYETLGGFVTATAGRVPPVGATLAWDGLTFTVRAGDERRVTRVEIARRGEVAAPEVAPAAARS
>Mature_464_residues
MDAVPTWKWLLGVAFLAASAFCSGTETALTALGEPRARQLRETGGRRARLLGLWIDHPERVLSTLLIGNTLVNVGAGALA
GSVGADLAGGGGWAPGTLVAIATGVTTVVILFAGEIVPKTIGKRHPAPVALWAMPMVQALCLAMWPLSAAVTRLTGWVVG
RLGGGRAPTPAVTSEEIEYLIEMGTREGVLDEVKEELLNSVLEFADRVAKEVMIPRTRMVAVDRAVEPDELVRIVTENPY
SRMPVYEGSIDNVVGILLVRDIIQELRHGPLRRIALDRYLKPAFFVPEQMKISRLLKEMQRRRTHLAVVVDEFGGTSGLV
TMEDVIEEIVGEIQDEADVESAPVKAVAPGVWLADAAIPLHDLQSFLNEQREEPAPRPAGDDAPEPEDGEPPPEIRFPEQ
GDYETLGGFVTATAGRVPPVGATLAWDGLTFTVRAGDERRVTRVEIARRGEVAAPEVAPAAARS

Specific function: Unknown

COG id: COG1253

COG function: function code R; Hemolysins and related proteins containing CBS domains

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 CBS domains [H]

Homologues:

Organism=Homo sapiens, GI310128564, Length=369, Percent_Identity=28.4552845528455, Blast_Score=149, Evalue=4e-36,
Organism=Homo sapiens, GI40068053, Length=356, Percent_Identity=30.6179775280899, Blast_Score=119, Evalue=4e-27,
Organism=Homo sapiens, GI40068055, Length=356, Percent_Identity=30.6179775280899, Blast_Score=119, Evalue=5e-27,
Organism=Homo sapiens, GI94681046, Length=341, Percent_Identity=30.2052785923754, Blast_Score=112, Evalue=9e-25,
Organism=Homo sapiens, GI40068051, Length=313, Percent_Identity=28.4345047923323, Blast_Score=92, Evalue=8e-19,
Organism=Homo sapiens, GI157412263, Length=286, Percent_Identity=26.9230769230769, Blast_Score=68, Evalue=2e-11,
Organism=Escherichia coli, GI145693175, Length=320, Percent_Identity=30.9375, Blast_Score=156, Evalue=2e-39,
Organism=Escherichia coli, GI1786879, Length=273, Percent_Identity=28.5714285714286, Blast_Score=132, Evalue=4e-32,
Organism=Escherichia coli, GI1790664, Length=459, Percent_Identity=23.0936819172113, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI87082033, Length=292, Percent_Identity=25.6849315068493, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI1788119, Length=288, Percent_Identity=29.1666666666667, Blast_Score=86, Evalue=6e-18,
Organism=Caenorhabditis elegans, GI17539402, Length=295, Percent_Identity=26.4406779661017, Blast_Score=72, Evalue=7e-13,
Organism=Saccharomyces cerevisiae, GI6324512, Length=290, Percent_Identity=26.551724137931, Blast_Score=88, Evalue=4e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016169
- InterPro:   IPR000644
- InterPro:   IPR002550
- InterPro:   IPR005170 [H]

Pfam domain/function: PF00571 CBS; PF03471 CorC_HlyC; PF01595 DUF21 [H]

EC number: NA

Molecular weight: Translated: 49941; Mature: 49941

Theoretical pI: Translated: 4.67; Mature: 4.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDAVPTWKWLLGVAFLAASAFCSGTETALTALGEPRARQLRETGGRRARLLGLWIDHPER
CCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHCCCCEEEEEEEECCCHHH
VLSTLLIGNTLVNVGAGALAGSVGADLAGGGGWAPGTLVAIATGVTTVVILFAGEIVPKT
HHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
IGKRHPAPVALWAMPMVQALCLAMWPLSAAVTRLTGWVVGRLGGGRAPTPAVTSEEIEYL
HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
IEMGTREGVLDEVKEELLNSVLEFADRVAKEVMIPRTRMVAVDRAVEPDELVRIVTENPY
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHCCCCC
SRMPVYEGSIDNVVGILLVRDIIQELRHGPLRRIALDRYLKPAFFVPEQMKISRLLKEMQ
CCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
RRRTHLAVVVDEFGGTSGLVTMEDVIEEIVGEIQDEADVESAPVKAVAPGVWLADAAIPL
HHHHHEEEEEECCCCCCCCEEHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCEECCCCCCH
HDLQSFLNEQREEPAPRPAGDDAPEPEDGEPPPEIRFPEQGDYETLGGFVTATAGRVPPV
HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCHHEECCCCCCCC
GATLAWDGLTFTVRAGDERRVTRVEIARRGEVAAPEVAPAAARS
CCEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MDAVPTWKWLLGVAFLAASAFCSGTETALTALGEPRARQLRETGGRRARLLGLWIDHPER
CCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHCCCCEEEEEEEECCCHHH
VLSTLLIGNTLVNVGAGALAGSVGADLAGGGGWAPGTLVAIATGVTTVVILFAGEIVPKT
HHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
IGKRHPAPVALWAMPMVQALCLAMWPLSAAVTRLTGWVVGRLGGGRAPTPAVTSEEIEYL
HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
IEMGTREGVLDEVKEELLNSVLEFADRVAKEVMIPRTRMVAVDRAVEPDELVRIVTENPY
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHCCCCC
SRMPVYEGSIDNVVGILLVRDIIQELRHGPLRRIALDRYLKPAFFVPEQMKISRLLKEMQ
CCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
RRRTHLAVVVDEFGGTSGLVTMEDVIEEIVGEIQDEADVESAPVKAVAPGVWLADAAIPL
HHHHHEEEEEECCCCCCCCEEHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCEECCCCCCH
HDLQSFLNEQREEPAPRPAGDDAPEPEDGEPPPEIRFPEQGDYETLGGFVTATAGRVPPV
HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCHHEECCCCCCCC
GATLAWDGLTFTVRAGDERRVTRVEIARRGEVAAPEVAPAAARS
CCEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]