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The map label for this gene is ywhC [H]

Identifier: 220917359

GI number: 220917359

Start: 2508952

End: 2509596

Strand: Direct

Name: ywhC [H]

Synonym: A2cp1_2259

Alternate gene names: 220917359

Gene position: 2508952-2509596 (Clockwise)

Preceding gene: 220917358

Following gene: 220917360

Centisome position: 49.89

GC content: 71.01

Gene sequence:

>645_bases
ATGGGGTTCGACCTCCAACGCGGGCTGATGATGCTCATCCCGCTCGTGCTCTCGCTTTCCGTGCACGAGTTCGCGCACGC
GTGGAGCGCCTGGAAGCTGGGCGACGACACGGCGTCCCGCATGGGGCGTCTCACGCTCAACCCCATCGCCCACGTGGACC
CCATCGGAACGGTGCTGCTGCCGCTGCTCGGCATCCCGTTCGGCTGGGCGCGCCCCGTGCCGGTGAACCCGGCGCGATTC
CGGCAAAACGTGAACATGAGCACGGGGATGGCGCTCACCGCGGCGGCCGGGCCCATCTCCAACATCCTGCTCGCGGTGCT
CTCGACGGTGGCGCTCGCGCTGTGCTGGCGGTGGGCGCCGACCGCCATCGCGCCGGGGCAGGGCGTGGGCGAGCTCCTGC
AGATCATGGTCCTGCTGAACGTGAACCTGGCGCTGTTCAACCTCATCCCCGTGCCGCCGCTCGACGGCAGCCGGGTGGTG
GACGGGTTCATGCCGGCGCGGCTGCGGCCGCAGTGGGAGCGCGTCACCGCGCTGTCGCCGTTCCTGCTCCTCGCCGTCTT
CGTCTTCGCCGGCCGCATCATCTCGGGCCCGTCGAGCTTCGTGGTCGGCCTGCTCGCCCAGCTCGCCGGCGCCATCACCG
CCTGA

Upstream 100 bases:

>100_bases
GAGCGGGCCGCGGTCCCGGCGCGTCCGGCGGCCGCCGAGCGCGTTGACCGCCCGGCCCCACGCTGCTAAAGAACCGCTTT
TCCCGACGAGGCTTTAGGCA

Downstream 100 bases:

>100_bases
CCCGCACCCGGAGATCCATGTCCTCGAAGCGCCCCATCATCGTCAGCGGCATGCGGCCCACCGGCCGCCTCCACCTCGGC
CACCTGCACGGCGCGCTCGC

Product: peptidase M50

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 214; Mature: 213

Protein sequence:

>214_residues
MGFDLQRGLMMLIPLVLSLSVHEFAHAWSAWKLGDDTASRMGRLTLNPIAHVDPIGTVLLPLLGIPFGWARPVPVNPARF
RQNVNMSTGMALTAAAGPISNILLAVLSTVALALCWRWAPTAIAPGQGVGELLQIMVLLNVNLALFNLIPVPPLDGSRVV
DGFMPARLRPQWERVTALSPFLLLAVFVFAGRIISGPSSFVVGLLAQLAGAITA

Sequences:

>Translated_214_residues
MGFDLQRGLMMLIPLVLSLSVHEFAHAWSAWKLGDDTASRMGRLTLNPIAHVDPIGTVLLPLLGIPFGWARPVPVNPARF
RQNVNMSTGMALTAAAGPISNILLAVLSTVALALCWRWAPTAIAPGQGVGELLQIMVLLNVNLALFNLIPVPPLDGSRVV
DGFMPARLRPQWERVTALSPFLLLAVFVFAGRIISGPSSFVVGLLAQLAGAITA
>Mature_213_residues
GFDLQRGLMMLIPLVLSLSVHEFAHAWSAWKLGDDTASRMGRLTLNPIAHVDPIGTVLLPLLGIPFGWARPVPVNPARFR
QNVNMSTGMALTAAAGPISNILLAVLSTVALALCWRWAPTAIAPGQGVGELLQIMVLLNVNLALFNLIPVPPLDGSRVVD
GFMPARLRPQWERVTALSPFLLLAVFVFAGRIISGPSSFVVGLLAQLAGAITA

Specific function: Unknown

COG id: COG1994

COG function: function code R; Zn-dependent proteases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M50B family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008915 [H]

Pfam domain/function: PF02163 Peptidase_M50 [H]

EC number: NA

Molecular weight: Translated: 22813; Mature: 22681

Theoretical pI: Translated: 11.53; Mature: 11.53

Prosite motif: PS00142 ZINC_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGFDLQRGLMMLIPLVLSLSVHEFAHAWSAWKLGDDTASRMGRLTLNPIAHVDPIGTVLL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCHHCCHHHHHHH
PLLGIPFGWARPVPVNPARFRQNVNMSTGMALTAAAGPISNILLAVLSTVALALCWRWAP
HHHCCCCCCCCCCCCCHHHHHHCCCCCCCCEEHHHHCHHHHHHHHHHHHHHHHHHHHCCC
TAIAPGQGVGELLQIMVLLNVNLALFNLIPVPPLDGSRVVDGFMPARLRPQWERVTALSP
CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHH
FLLLAVFVFAGRIISGPSSFVVGLLAQLAGAITA
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
GFDLQRGLMMLIPLVLSLSVHEFAHAWSAWKLGDDTASRMGRLTLNPIAHVDPIGTVLL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCHHCCHHHHHHH
PLLGIPFGWARPVPVNPARFRQNVNMSTGMALTAAAGPISNILLAVLSTVALALCWRWAP
HHHCCCCCCCCCCCCCHHHHHHCCCCCCCCEEHHHHCHHHHHHHHHHHHHHHHHHHHCCC
TAIAPGQGVGELLQIMVLLNVNLALFNLIPVPPLDGSRVVDGFMPARLRPQWERVTALSP
CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHH
FLLLAVFVFAGRIISGPSSFVVGLLAQLAGAITA
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377 [H]