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The map label for this gene is nodB [H]

Identifier: 220916647

GI number: 220916647

Start: 1721520

End: 1722362

Strand: Direct

Name: nodB [H]

Synonym: A2cp1_1541

Alternate gene names: 220916647

Gene position: 1721520-1722362 (Clockwise)

Preceding gene: 220916646

Following gene: 220916648

Centisome position: 34.23

GC content: 81.38

Gene sequence:

>843_bases
GTGCCGGCCCGCAAGCGGCTCGCGGTGGCGCTGGCGGTGCTCGGGGGCGTGGCGCTGCTCGCGCTGGCGGCGTGGCTGGC
GATCCGGGGACGCCCGGGACCCGGCGCGGCGCTCGGGCTCGCCACGGTCGCCGCCGCGCTCGGCGTCCTCCAGGCGCTCT
GGGTGCCGTTCGATCTCACCGGCCGGAGCCTGCGGCGCGGGCCGCCGGGGTCGCGGGCGGTGGCGCTCACCTTCGACGAC
GGGCCCTCCGACGACACGCCGGCGGTGCTGGCCGCGCTCGACCGCGCCGGCGTCCGGGCCACGTTCTTCGTGCTGGGCGA
GGCGGCGCGCCGCGCGCCGGAGCGGGTCCGGGAGGTCGCCCGCCGCGGGCACCTGGTGGCGCTGCACGGCGACACGCACG
CGAAGCTGCTCCTGGCGGGGCCGCGGCGGGTGGCCGCCGAGCTCGATCGCTGCGCCGACGCCATCCGCGCCGCCGGCGTC
GAGCCCGCGCCGCTGTTCCGCGCGCCGCACGGCTTCCGCGGCCCGTTCCTCGGGCCGGCGCTGCGCCGGCGCGGCCTCAC
GCTGGTGGGCTGGACGCGCGGCGTCTTCGACACCGAGCGCCCGGGCGCCGAGGCCATCGCGGCGAGCGCCAGCCGCCGCA
TGCGGCCCGGCGAGATCCTGCTGCTGCACGACGGCTGCGCCACGCCCGGGATCGACCCGCGCCGCGACCAGACCGCCGCT
GCGGTGCCGGAGATCGTCCGCCGCTGGCGCGAGGCCGGGTACGCGTTCGTGACGCTGGACGCGTTCGCCGCGCCGCGGGG
GGCGGAGGGCGGGGCGGGCGCCGCCGCGCGGGGAGGGGCGTAG

Upstream 100 bases:

>100_bases
GAGCGCGGCCGCCTCACCGCCCAGCGCTACGCCTGGCCCTCGGTGACGCGCGAGGTGCTCGGGCTGTACCGCTCCATCGG
CGTCCGGGGCTGAGGCGCGC

Downstream 100 bases:

>100_bases
CGGATGGGCGAGCGGCTCGCCGGCCTGCGGTCCCTCGCGCCGGCGCGGCCCGGGAGCCGGACCGCGCTGCACCTGGCCGG
CCTCGCCGTCGTCGCCGGGC

Product: polysaccharide deacetylase

Products: NA

Alternate protein names: Nodulation protein B [H]

Number of amino acids: Translated: 280; Mature: 279

Protein sequence:

>280_residues
MPARKRLAVALAVLGGVALLALAAWLAIRGRPGPGAALGLATVAAALGVLQALWVPFDLTGRSLRRGPPGSRAVALTFDD
GPSDDTPAVLAALDRAGVRATFFVLGEAARRAPERVREVARRGHLVALHGDTHAKLLLAGPRRVAAELDRCADAIRAAGV
EPAPLFRAPHGFRGPFLGPALRRRGLTLVGWTRGVFDTERPGAEAIAASASRRMRPGEILLLHDGCATPGIDPRRDQTAA
AVPEIVRRWREAGYAFVTLDAFAAPRGAEGGAGAAARGGA

Sequences:

>Translated_280_residues
MPARKRLAVALAVLGGVALLALAAWLAIRGRPGPGAALGLATVAAALGVLQALWVPFDLTGRSLRRGPPGSRAVALTFDD
GPSDDTPAVLAALDRAGVRATFFVLGEAARRAPERVREVARRGHLVALHGDTHAKLLLAGPRRVAAELDRCADAIRAAGV
EPAPLFRAPHGFRGPFLGPALRRRGLTLVGWTRGVFDTERPGAEAIAASASRRMRPGEILLLHDGCATPGIDPRRDQTAA
AVPEIVRRWREAGYAFVTLDAFAAPRGAEGGAGAAARGGA
>Mature_279_residues
PARKRLAVALAVLGGVALLALAAWLAIRGRPGPGAALGLATVAAALGVLQALWVPFDLTGRSLRRGPPGSRAVALTFDDG
PSDDTPAVLAALDRAGVRATFFVLGEAARRAPERVREVARRGHLVALHGDTHAKLLLAGPRRVAAELDRCADAIRAAGVE
PAPLFRAPHGFRGPFLGPALRRRGLTLVGWTRGVFDTERPGAEAIAASASRRMRPGEILLLHDGCATPGIDPRRDQTAAA
VPEIVRRWREAGYAFVTLDAFAAPRGAEGGAGAAARGGA

Specific function: Is involved in generating a small heat-stable compound (Nod), an acylated oligomer of N-acetylglucosamine, that stimulates mitosis in various plant protoplasts [H]

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6323338, Length=159, Percent_Identity=28.9308176100629, Blast_Score=69, Evalue=6e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 29093; Mature: 28962

Theoretical pI: Translated: 11.95; Mature: 11.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPARKRLAVALAVLGGVALLALAAWLAIRGRPGPGAALGLATVAAALGVLQALWVPFDLT
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
GRSLRRGPPGSRAVALTFDDGPSDDTPAVLAALDRAGVRATFFVLGEAARRAPERVREVA
CCHHHCCCCCCCEEEEEECCCCCCCCHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHHHH
RRGHLVALHGDTHAKLLLAGPRRVAAELDRCADAIRAAGVEPAPLFRAPHGFRGPFLGPA
HCCCEEEEECCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHH
LRRRGLTLVGWTRGVFDTERPGAEAIAASASRRMRPGEILLLHDGCATPGIDPRRDQTAA
HHHCCCEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHH
AVPEIVRRWREAGYAFVTLDAFAAPRGAEGGAGAAARGGA
HHHHHHHHHHHCCEEEEEEEHHCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
PARKRLAVALAVLGGVALLALAAWLAIRGRPGPGAALGLATVAAALGVLQALWVPFDLT
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
GRSLRRGPPGSRAVALTFDDGPSDDTPAVLAALDRAGVRATFFVLGEAARRAPERVREVA
CCHHHCCCCCCCEEEEEECCCCCCCCHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHHHH
RRGHLVALHGDTHAKLLLAGPRRVAAELDRCADAIRAAGVEPAPLFRAPHGFRGPFLGPA
HCCCEEEEECCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHH
LRRRGLTLVGWTRGVFDTERPGAEAIAASASRRMRPGEILLLHDGCATPGIDPRRDQTAA
HHHCCCEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHH
AVPEIVRRWREAGYAFVTLDAFAAPRGAEGGAGAAARGGA
HHHHHHHHHHHCCEEEEEEEHHCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 4006668; 6336331; 11481432 [H]