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The map label for this gene is secF [H]

Identifier: 220916517

GI number: 220916517

Start: 1577094

End: 1578302

Strand: Direct

Name: secF [H]

Synonym: A2cp1_1411

Alternate gene names: 220916517

Gene position: 1577094-1578302 (Clockwise)

Preceding gene: 220916516

Following gene: 220916519

Centisome position: 31.36

GC content: 67.99

Gene sequence:

>1209_bases
ATGCAATTCAAGACCTTCGACATCATCCCCCACGACACGAAGTTCGACTTCGTGGGCAAGCGCCACATCGCCGTGGCGCT
CTCGCTGGTCGTGAACCTGGCGATCATCCTGTGGTCGCTCCCGTTCGTCCACGGCCTGAACATGGGCGTGGACTTCGCGG
GCGGCACCGAGATGGAGGTCCAGTTCGGCAAGCCCGTCGATCCGGCCGACATCCGCAAGACGGTCGAGGACCTGGGCTTC
AAGGGCGCCTCGGTCCAGACCTACGGCGCCGAGGCCGAGCACACGTTCCTCATCCGCGTGGAGCGCATCTCGCTGCTCAC
CGAGGCGGACGTGGCCCGGGTGGCCGACGCGGTGAAGACGAAGCTGCCGGTGGCGGGCTTCGCGTTCAACCCGGAGTTCG
GCGACAAGATCGACTTCCAGTTCTCGGGCGCGGTCGACGCCGCCGCGGTCCGGGCGGCGGTCGAGGCGGCCGGCGTGAAG
GTGCGCGACGTCCGGGAGGAGCAGGGCCTCACCGCCGGCACGCGCTCCTACGCGGTCATCACCCAGGGCATCCAGGAGAA
CGTCCAGGCCGGCCTGAAGGCGCAGCTGGGCGACTCGCAGCCGAACGTGCGCCGCGTCGAGTACGTCGGCCCGGCCGCCG
GCCGCGAGCTCCAGGCGCAGGGCCTGAAGGCCATCCTGTACGCCATCGGCCTCATCGTGGTGTACATCGGCCTGCGGTTC
GACTTCCGCTTCAGCCCGGGCGTGGTCATCGCGATGCTGCACGACGCGATCATGACCATGGGCTATTTCACCATCAGCGG
CCGCGAGTTCAACCTGACCTCGATCGCGGTGATCCTGACGGTGGTCGGCTACTCGGTGAACGACACGGTGGTCATCTACG
ACCGCATCCGCGAGAACCAGGCCAAGCTGCGCGGCCGGAGCCTCTCGGACATCGTGAACCTCTCCATCAACGAGGTGCTG
GGCCGCACGTTCCTCACCTCGTTCGCCACCGCGCTCTCGCTCATCGGCCTGCTCGTCTACGGCGTGGGCACGATCTTCGA
CTTCTCGATGGCGATGCTGTTCGGCATCGTCTCGGGCACCTACTCCACCTGGTTCATCGCCGCCCCGATGACCATCTGGC
TGGAGGAGCGCGCCGAGAAGAAGCGGGCGAAGGCGAAGGGCGCGGCCGCCGCGGCCGCGGCCCAGCCGCAGGCGCGCACC
GCGAAGTAG

Upstream 100 bases:

>100_bases
TGATCATCGGCCTGGTCGCCTCGATGTTCACGTCGATCGTGGTGACCCGGGTGATCATGGAGTACTTCACGCGCCACGAC
ACGGCGCGCCTGAGCGTCTG

Downstream 100 bases:

>100_bases
CCGCGCGCCGGCAGCGGTTCCGGAGGGCCCTTCGCGCCAGCGGGGGGCCCTCCGCCGTTCCGGGGCGCCTCACTCGCCGC
CCATCCGCACCCGCAGCCCC

Product: protein-export membrane protein SecF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 402; Mature: 402

Protein sequence:

>402_residues
MQFKTFDIIPHDTKFDFVGKRHIAVALSLVVNLAIILWSLPFVHGLNMGVDFAGGTEMEVQFGKPVDPADIRKTVEDLGF
KGASVQTYGAEAEHTFLIRVERISLLTEADVARVADAVKTKLPVAGFAFNPEFGDKIDFQFSGAVDAAAVRAAVEAAGVK
VRDVREEQGLTAGTRSYAVITQGIQENVQAGLKAQLGDSQPNVRRVEYVGPAAGRELQAQGLKAILYAIGLIVVYIGLRF
DFRFSPGVVIAMLHDAIMTMGYFTISGREFNLTSIAVILTVVGYSVNDTVVIYDRIRENQAKLRGRSLSDIVNLSINEVL
GRTFLTSFATALSLIGLLVYGVGTIFDFSMAMLFGIVSGTYSTWFIAAPMTIWLEERAEKKRAKAKGAAAAAAAQPQART
AK

Sequences:

>Translated_402_residues
MQFKTFDIIPHDTKFDFVGKRHIAVALSLVVNLAIILWSLPFVHGLNMGVDFAGGTEMEVQFGKPVDPADIRKTVEDLGF
KGASVQTYGAEAEHTFLIRVERISLLTEADVARVADAVKTKLPVAGFAFNPEFGDKIDFQFSGAVDAAAVRAAVEAAGVK
VRDVREEQGLTAGTRSYAVITQGIQENVQAGLKAQLGDSQPNVRRVEYVGPAAGRELQAQGLKAILYAIGLIVVYIGLRF
DFRFSPGVVIAMLHDAIMTMGYFTISGREFNLTSIAVILTVVGYSVNDTVVIYDRIRENQAKLRGRSLSDIVNLSINEVL
GRTFLTSFATALSLIGLLVYGVGTIFDFSMAMLFGIVSGTYSTWFIAAPMTIWLEERAEKKRAKAKGAAAAAAAQPQART
AK
>Mature_402_residues
MQFKTFDIIPHDTKFDFVGKRHIAVALSLVVNLAIILWSLPFVHGLNMGVDFAGGTEMEVQFGKPVDPADIRKTVEDLGF
KGASVQTYGAEAEHTFLIRVERISLLTEADVARVADAVKTKLPVAGFAFNPEFGDKIDFQFSGAVDAAAVRAAVEAAGVK
VRDVREEQGLTAGTRSYAVITQGIQENVQAGLKAQLGDSQPNVRRVEYVGPAAGRELQAQGLKAILYAIGLIVVYIGLRF
DFRFSPGVVIAMLHDAIMTMGYFTISGREFNLTSIAVILTVVGYSVNDTVVIYDRIRENQAKLRGRSLSDIVNLSINEVL
GRTFLTSFATALSLIGLLVYGVGTIFDFSMAMLFGIVSGTYSTWFIAAPMTIWLEERAEKKRAKAKGAAAAAAAQPQART
AK

Specific function: Involved in protein export [H]

COG id: COG0341

COG function: function code U; Preprotein translocase subunit SecF

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786610, Length=391, Percent_Identity=28.6445012787724, Blast_Score=141, Evalue=9e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645
- InterPro:   IPR005665 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 43524; Mature: 43524

Theoretical pI: Translated: 8.67; Mature: 8.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQFKTFDIIPHDTKFDFVGKRHIAVALSLVVNLAIILWSLPFVHGLNMGVDFAGGTEMEV
CCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCEEEE
QFGKPVDPADIRKTVEDLGFKGASVQTYGAEAEHTFLIRVERISLLTEADVARVADAVKT
ECCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHH
KLPVAGFAFNPEFGDKIDFQFSGAVDAAAVRAAVEAAGVKVRDVREEQGLTAGTRSYAVI
CCCCCEEEECCCCCCEECEEECCCHHHHHHHHHHHHCCCCCEECHHHCCCCCCCCHHHHH
TQGIQENVQAGLKAQLGDSQPNVRRVEYVGPAAGRELQAQGLKAILYAIGLIVVYIGLRF
HHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHEE
DFRFSPGVVIAMLHDAIMTMGYFTISGREFNLTSIAVILTVVGYSVNDTVVIYDRIRENQ
EEEECCCHHHHHHHHHHHHHHEEEECCCEECHHHHHHHHHHHCCCCCCEEEEEEHHHHHH
AKLRGRSLSDIVNLSINEVLGRTFLTSFATALSLIGLLVYGVGTIFDFSMAMLFGIVSGT
HHHCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
YSTWFIAAPMTIWLEERAEKKRAKAKGAAAAAAAQPQARTAK
CCEEEEECCHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCC
>Mature Secondary Structure
MQFKTFDIIPHDTKFDFVGKRHIAVALSLVVNLAIILWSLPFVHGLNMGVDFAGGTEMEV
CCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCEEEE
QFGKPVDPADIRKTVEDLGFKGASVQTYGAEAEHTFLIRVERISLLTEADVARVADAVKT
ECCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHH
KLPVAGFAFNPEFGDKIDFQFSGAVDAAAVRAAVEAAGVKVRDVREEQGLTAGTRSYAVI
CCCCCEEEECCCCCCEECEEECCCHHHHHHHHHHHHCCCCCEECHHHCCCCCCCCHHHHH
TQGIQENVQAGLKAQLGDSQPNVRRVEYVGPAAGRELQAQGLKAILYAIGLIVVYIGLRF
HHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHEE
DFRFSPGVVIAMLHDAIMTMGYFTISGREFNLTSIAVILTVVGYSVNDTVVIYDRIRENQ
EEEECCCHHHHHHHHHHHHHHEEEECCCEECHHHHHHHHHHHCCCCCCEEEEEEHHHHHH
AKLRGRSLSDIVNLSINEVLGRTFLTSFATALSLIGLLVYGVGTIFDFSMAMLFGIVSGT
HHHCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
YSTWFIAAPMTIWLEERAEKKRAKAKGAAAAAAAQPQARTAK
CCEEEEECCHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9823893 [H]