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The map label for this gene is secD [H]

Identifier: 220916516

GI number: 220916516

Start: 1575253

End: 1577094

Strand: Direct

Name: secD [H]

Synonym: A2cp1_1410

Alternate gene names: 220916516

Gene position: 1575253-1577094 (Clockwise)

Preceding gene: 220916515

Following gene: 220916517

Centisome position: 31.32

GC content: 69.76

Gene sequence:

>1842_bases
ATGGAACGCTCCTGGTACTGGCGCGTCGCGCTCGTCGTGGCGGTCGCGATCCTGTCGATCTACCAGCTCGTCCCGAGCTG
GTTCTACTTCAAGCTCCCGCCCGACCAGCGGAACACCGAGGCGTACGACACCTCGGTGCCGGGCTGGGCGCCGGACGCGA
AGCACCACCTCAACCTCGGCCTGGACCTCCAGGGCGGCATCCTGCTCTCCATGGGCGTGGACGTCGACCGGGCGGTGAAG
ACCAAGGTCGCCCGCCGCGCCGACGAGATCGGCGAGTTCCTGAAGGGCAAGAACGTCGCGTTCACCGGCACGCAGGTGGT
CGGCGGCGGCGCGCAAGTCGAGGTGGCCGCCGCGAACCCGGGCGAGGTGAAGGACGCGGTGCTCGGCTCCTCCGGCTACG
CGGAGGAGATGTACTCGCCGGGCGGCGCGCCGGAGGGCGCGGTCCGCTTCGCGTTCAAGGACTCGGTGCTCCGCGACTTC
CGCGAGAAGGCGGTGAAGCAGGCGGAGAAGGTCATCCGCAACCGCGTGGACAAGTGGGGCGTCACCGAGCCCGACATCAA
GACCAAGGCGAACAACCAGATCCAGGTCCAGCTCCCGGGCTTCAAGGATCCGGAGAAGGCCAAGGAGCTGCTGGGCCGCA
CCGCGCAGCTCGAGTTCAAGATCGCCGACGACGAGAACCCGGCGCTCGACCCGGTCCGCGGGCAGCTCCCGCAGTGCCAG
GGCGACCGCCAGGGCCTGTCCCTGCCGCTCCCCGAGACCGGCTGCTGGACGGTGGAGCCGGTCGAGCTGCCGAACGGCGG
CACGCGCGCGGCCACCATGGTCGCGGCGAACACCCGCACCGAGCTGGAGAAGGTCATCGCGGAGAAGCTGAACCCGCTGC
TCGACCCGCAGAAGAACGCGGTCGGCATCGGCGAGGGCCAGGTCGGCCAGGGCCCCATCAAGACCACCTACTACCGGACC
TACCTGCTCCGCGCGAAGACCGAGCTGACCGGCGACTACATCGCCGACGCGGCGGTGGCCGTGGACCAGTCCGACACGCT
CCAGCGCGGGCGCCCGGTGGTCTCCTTCAAGATGTCGCCCGAGGGGGCGCGCCTGATGGAGAAGCTCACCACCGAGAACA
TGCGGCGCCGGATGGCGACGGTGCTCGACGACAAGGTCGAGACCGCGCCGTACATCCAGGGCCGCATCTCCTCCAACGGC
CAGATCACGCTCGGCTCGGGCCGCAACCAGCAGGACATGTTCGACGAGGCGAACGGCATCGCGCTGGTGCTGAAGGCTGG
CGCGCTCCCCGCGCCGGTGACCATCACCGAGGAGCGCACCGTGGGCGCCACCCTCGGGCCGGAGCTGGTGCGCAAGGGCA
CGCTCGCGGCGCTGGTCGGCCTCGCGCTGGTGGTGGTGTTCATGGTCGTCTACTACCGCGGCACCGGCCTGGTGGCGGAC
GTGGCGCTGGCGCTGAACGGCCTGCTGGTGCTGGCGGTCATGTCGATGATCGGCACCACGCTGACGCTGCCGGGCATCGC
CGGGTTCGTGCTCACGCTCGGCATGGCGGTGGACGCGAACGTGCTCATCAACGAGCGCATCCGCGAGGAGATGCGCGCCG
GGCGCAACGTGCGGCAGTCGGTGCAGCTCGGCTACGACCGCGTGTTCTGGACCATCGTGGACTCGCACGTGACCACGCTG
GTCGCCGGCGTGGTGCTGTTCCAGTACGGGTCGGGGCCGATCCGCGGCTTCGCGGTGACGCTGATCATCGGCCTGGTCGC
CTCGATGTTCACGTCGATCGTGGTGACCCGGGTGATCATGGAGTACTTCACGCGCCACGACACGGCGCGCCTGAGCGTCT
GA

Upstream 100 bases:

>100_bases
CGTCGGCGCGGGGACCAAGCTCCGCGTGCTCAAGGGCCAGGTCGCCGGCCAGTGGAAGCAGGTGGAGGCCCAGCCGGCCA
AGGCGGAGGGGAAGAAGTAG

Downstream 100 bases:

>100_bases
TGCAATTCAAGACCTTCGACATCATCCCCCACGACACGAAGTTCGACTTCGTGGGCAAGCGCCACATCGCCGTGGCGCTC
TCGCTGGTCGTGAACCTGGC

Product: protein-export membrane protein SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 613; Mature: 613

Protein sequence:

>613_residues
MERSWYWRVALVVAVAILSIYQLVPSWFYFKLPPDQRNTEAYDTSVPGWAPDAKHHLNLGLDLQGGILLSMGVDVDRAVK
TKVARRADEIGEFLKGKNVAFTGTQVVGGGAQVEVAAANPGEVKDAVLGSSGYAEEMYSPGGAPEGAVRFAFKDSVLRDF
REKAVKQAEKVIRNRVDKWGVTEPDIKTKANNQIQVQLPGFKDPEKAKELLGRTAQLEFKIADDENPALDPVRGQLPQCQ
GDRQGLSLPLPETGCWTVEPVELPNGGTRAATMVAANTRTELEKVIAEKLNPLLDPQKNAVGIGEGQVGQGPIKTTYYRT
YLLRAKTELTGDYIADAAVAVDQSDTLQRGRPVVSFKMSPEGARLMEKLTTENMRRRMATVLDDKVETAPYIQGRISSNG
QITLGSGRNQQDMFDEANGIALVLKAGALPAPVTITEERTVGATLGPELVRKGTLAALVGLALVVVFMVVYYRGTGLVAD
VALALNGLLVLAVMSMIGTTLTLPGIAGFVLTLGMAVDANVLINERIREEMRAGRNVRQSVQLGYDRVFWTIVDSHVTTL
VAGVVLFQYGSGPIRGFAVTLIIGLVASMFTSIVVTRVIMEYFTRHDTARLSV

Sequences:

>Translated_613_residues
MERSWYWRVALVVAVAILSIYQLVPSWFYFKLPPDQRNTEAYDTSVPGWAPDAKHHLNLGLDLQGGILLSMGVDVDRAVK
TKVARRADEIGEFLKGKNVAFTGTQVVGGGAQVEVAAANPGEVKDAVLGSSGYAEEMYSPGGAPEGAVRFAFKDSVLRDF
REKAVKQAEKVIRNRVDKWGVTEPDIKTKANNQIQVQLPGFKDPEKAKELLGRTAQLEFKIADDENPALDPVRGQLPQCQ
GDRQGLSLPLPETGCWTVEPVELPNGGTRAATMVAANTRTELEKVIAEKLNPLLDPQKNAVGIGEGQVGQGPIKTTYYRT
YLLRAKTELTGDYIADAAVAVDQSDTLQRGRPVVSFKMSPEGARLMEKLTTENMRRRMATVLDDKVETAPYIQGRISSNG
QITLGSGRNQQDMFDEANGIALVLKAGALPAPVTITEERTVGATLGPELVRKGTLAALVGLALVVVFMVVYYRGTGLVAD
VALALNGLLVLAVMSMIGTTLTLPGIAGFVLTLGMAVDANVLINERIREEMRAGRNVRQSVQLGYDRVFWTIVDSHVTTL
VAGVVLFQYGSGPIRGFAVTLIIGLVASMFTSIVVTRVIMEYFTRHDTARLSV
>Mature_613_residues
MERSWYWRVALVVAVAILSIYQLVPSWFYFKLPPDQRNTEAYDTSVPGWAPDAKHHLNLGLDLQGGILLSMGVDVDRAVK
TKVARRADEIGEFLKGKNVAFTGTQVVGGGAQVEVAAANPGEVKDAVLGSSGYAEEMYSPGGAPEGAVRFAFKDSVLRDF
REKAVKQAEKVIRNRVDKWGVTEPDIKTKANNQIQVQLPGFKDPEKAKELLGRTAQLEFKIADDENPALDPVRGQLPQCQ
GDRQGLSLPLPETGCWTVEPVELPNGGTRAATMVAANTRTELEKVIAEKLNPLLDPQKNAVGIGEGQVGQGPIKTTYYRT
YLLRAKTELTGDYIADAAVAVDQSDTLQRGRPVVSFKMSPEGARLMEKLTTENMRRRMATVLDDKVETAPYIQGRISSNG
QITLGSGRNQQDMFDEANGIALVLKAGALPAPVTITEERTVGATLGPELVRKGTLAALVGLALVVVFMVVYYRGTGLVAD
VALALNGLLVLAVMSMIGTTLTLPGIAGFVLTLGMAVDANVLINERIREEMRAGRNVRQSVQLGYDRVFWTIVDSHVTTL
VAGVVLFQYGSGPIRGFAVTLIIGLVASMFTSIVVTRVIMEYFTRHDTARLSV

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=302, Percent_Identity=39.0728476821192, Blast_Score=206, Evalue=4e-54,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001036
- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 66456; Mature: 66456

Theoretical pI: Translated: 7.55; Mature: 7.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MERSWYWRVALVVAVAILSIYQLVPSWFYFKLPPDQRNTEAYDTSVPGWAPDAKHHLNLG
CCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHCEEC
LDLQGGILLSMGVDVDRAVKTKVARRADEIGEFLKGKNVAFTGTQVVGGGAQVEVAAANP
EEECCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCEEECCCCEEEEEECCC
GEVKDAVLGSSGYAEEMYSPGGAPEGAVRFAFKDSVLRDFREKAVKQAEKVIRNRVDKWG
CHHHHHHHCCCCCHHHHCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
VTEPDIKTKANNQIQVQLPGFKDPEKAKELLGRTAQLEFKIADDENPALDPVRGQLPQCQ
CCCCCCCCCCCCEEEEEECCCCCHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCC
GDRQGLSLPLPETGCWTVEPVELPNGGTRAATMVAANTRTELEKVIAEKLNPLLDPQKNA
CCCCCCCCCCCCCCCEEECEEECCCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCCCC
VGIGEGQVGQGPIKTTYYRTYLLRAKTELTGDYIADAAVAVDQSDTLQRGRPVVSFKMSP
EECCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHEECCCHHHHCCCCEEEEEECC
EGARLMEKLTTENMRRRMATVLDDKVETAPYIQGRISSNGQITLGSGRNQQDMFDEANGI
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEECCCCCHHHHHHCCCCE
ALVLKAGALPAPVTITEERTVGATLGPELVRKGTLAALVGLALVVVFMVVYYRGTGLVAD
EEEEECCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
VALALNGLLVLAVMSMIGTTLTLPGIAGFVLTLGMAVDANVLINERIREEMRAGRNVRQS
HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHH
VQLGYDRVFWTIVDSHVTTLVAGVVLFQYGSGPIRGFAVTLIIGLVASMFTSIVVTRVIM
HHHCHHHHEEHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
EYFTRHDTARLSV
HHHHCCCCCCCCC
>Mature Secondary Structure
MERSWYWRVALVVAVAILSIYQLVPSWFYFKLPPDQRNTEAYDTSVPGWAPDAKHHLNLG
CCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHCEEC
LDLQGGILLSMGVDVDRAVKTKVARRADEIGEFLKGKNVAFTGTQVVGGGAQVEVAAANP
EEECCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCEEECCCCEEEEEECCC
GEVKDAVLGSSGYAEEMYSPGGAPEGAVRFAFKDSVLRDFREKAVKQAEKVIRNRVDKWG
CHHHHHHHCCCCCHHHHCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
VTEPDIKTKANNQIQVQLPGFKDPEKAKELLGRTAQLEFKIADDENPALDPVRGQLPQCQ
CCCCCCCCCCCCEEEEEECCCCCHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCC
GDRQGLSLPLPETGCWTVEPVELPNGGTRAATMVAANTRTELEKVIAEKLNPLLDPQKNA
CCCCCCCCCCCCCCCEEECEEECCCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCCCC
VGIGEGQVGQGPIKTTYYRTYLLRAKTELTGDYIADAAVAVDQSDTLQRGRPVVSFKMSP
EECCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHEECCCHHHHCCCCEEEEEECC
EGARLMEKLTTENMRRRMATVLDDKVETAPYIQGRISSNGQITLGSGRNQQDMFDEANGI
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEECCCCCHHHHHHCCCCE
ALVLKAGALPAPVTITEERTVGATLGPELVRKGTLAALVGLALVVVFMVVYYRGTGLVAD
EEEEECCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
VALALNGLLVLAVMSMIGTTLTLPGIAGFVLTLGMAVDANVLINERIREEMRAGRNVRQS
HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHH
VQLGYDRVFWTIVDSHVTTLVAGVVLFQYGSGPIRGFAVTLIIGLVASMFTSIVVTRVIM
HHHCHHHHEEHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
EYFTRHDTARLSV
HHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9923682 [H]