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The map label for this gene is dfrA [H]

Identifier: 220916507

GI number: 220916507

Start: 1567197

End: 1567583

Strand: Direct

Name: dfrA [H]

Synonym: A2cp1_1401

Alternate gene names: 220916507

Gene position: 1567197-1567583 (Clockwise)

Preceding gene: 220916506

Following gene: 220916509

Centisome position: 31.16

GC content: 74.16

Gene sequence:

>387_bases
ATGAAGACCCCCATCGCGACGGACGGCGCCCCGAAGGCCATCGGCCCCTACAGCCAGGGCGTCGAGGCGCGCGGCAACCG
CACGCTCTACTTCTCCGGTCAGATCCCGCTCGACCCGGCCACCGGCGAGCTGGTGAAGGGCACCATCGAGGAGGAGACGG
CGCGCGCGCTCGGGAACCTGCGCGCGGCGCTCGCCGCCGCCGGCGCCGGCCCGGAGCACGTGGTGAAGACCACCGTGTTC
CTCGCCGACCTCGGGGACTTCGCGAGGATGAACGCCGAGTACGCGAAGCACTTCCCCGCGCCGGCGCCGGCCCGCTCCAC
CGTGCAGGTGGCCGGGCTCCCCCGCGGCGCGCGCGTGGAGATCGAGGCGATCGCGGTCGTCGACTGA

Upstream 100 bases:

>100_bases
AGCATCGAACGGATCGAGGGCGTGCAGTCGGTCCAGCGCGTCTGAGGTGGCCCCCGCCGGCGCGTTGCCGGGGCCGCCGC
GCGCGGGTAGGGTGCCGCGC

Downstream 100 bases:

>100_bases
CGGCGCGGGCTACGGCTCGACGTACTCGAACTGCTTGCCGGCGAAGTTGCGGAGCACCCAGCGCTTCCCCTCGTGGGAGA
CCACGTACTCGGGGTTCACC

Product: endoribonuclease L-PSP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 128; Mature: 128

Protein sequence:

>128_residues
MKTPIATDGAPKAIGPYSQGVEARGNRTLYFSGQIPLDPATGELVKGTIEEETARALGNLRAALAAAGAGPEHVVKTTVF
LADLGDFARMNAEYAKHFPAPAPARSTVQVAGLPRGARVEIEAIAVVD

Sequences:

>Translated_128_residues
MKTPIATDGAPKAIGPYSQGVEARGNRTLYFSGQIPLDPATGELVKGTIEEETARALGNLRAALAAAGAGPEHVVKTTVF
LADLGDFARMNAEYAKHFPAPAPARSTVQVAGLPRGARVEIEAIAVVD
>Mature_128_residues
MKTPIATDGAPKAIGPYSQGVEARGNRTLYFSGQIPLDPATGELVKGTIEEETARALGNLRAALAAAGAGPEHVVKTTVF
LADLGDFARMNAEYAKHFPAPAPARSTVQVAGLPRGARVEIEAIAVVD

Specific function: Unknown

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=122, Percent_Identity=51.6393442622951, Blast_Score=125, Evalue=1e-29,
Organism=Escherichia coli, GI87082396, Length=129, Percent_Identity=49.6124031007752, Blast_Score=107, Evalue=3e-25,
Organism=Escherichia coli, GI87082213, Length=129, Percent_Identity=44.9612403100775, Blast_Score=102, Evalue=7e-24,
Organism=Caenorhabditis elegans, GI25148896, Length=122, Percent_Identity=50.8196721311475, Blast_Score=117, Evalue=2e-27,
Organism=Caenorhabditis elegans, GI71982075, Length=122, Percent_Identity=50.8196721311475, Blast_Score=116, Evalue=2e-27,
Organism=Caenorhabditis elegans, GI71982068, Length=122, Percent_Identity=50.8196721311475, Blast_Score=116, Evalue=3e-27,
Organism=Saccharomyces cerevisiae, GI6322138, Length=124, Percent_Identity=43.5483870967742, Blast_Score=102, Evalue=1e-23,
Organism=Saccharomyces cerevisiae, GI6320899, Length=102, Percent_Identity=42.156862745098, Blast_Score=92, Evalue=3e-20,
Organism=Drosophila melanogaster, GI19921376, Length=122, Percent_Identity=48.3606557377049, Blast_Score=103, Evalue=2e-23,

Paralogues:

None

Copy number: 1320 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13266; Mature: 13266

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: PS01094 UPF0076

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTPIATDGAPKAIGPYSQGVEARGNRTLYFSGQIPLDPATGELVKGTIEEETARALGNL
CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHCCCHHHHHHHHHHHH
RAALAAAGAGPEHVVKTTVFLADLGDFARMNAEYAKHFPAPAPARSTVQVAGLPRGARVE
HHHHHHCCCCHHHHHHHHHHHHHCCHHHHHCHHHHHHCCCCCCCCCEEEEECCCCCCEEE
IEAIAVVD
EEEEEEEC
>Mature Secondary Structure
MKTPIATDGAPKAIGPYSQGVEARGNRTLYFSGQIPLDPATGELVKGTIEEETARALGNL
CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHCCCHHHHHHHHHHHH
RAALAAAGAGPEHVVKTTVFLADLGDFARMNAEYAKHFPAPAPARSTVQVAGLPRGARVE
HHHHHHCCCCHHHHHHHHHHHHHCCHHHHHCHHHHHHCCCCCCCCCEEEEECCCCCCEEE
IEAIAVVD
EEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA