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The map label for this gene is yqxC [H]

Identifier: 220916332

GI number: 220916332

Start: 1376687

End: 1377436

Strand: Direct

Name: yqxC [H]

Synonym: A2cp1_1226

Alternate gene names: 220916332

Gene position: 1376687-1377436 (Clockwise)

Preceding gene: 220916331

Following gene: 220916333

Centisome position: 27.37

GC content: 75.2

Gene sequence:

>750_bases
GTGAAGAAGAAGCGGGAACGGATAGACGTGCTGCTGGTCGCGCGCGGCCTGGCCGAGTCGCGCACCCGCGCCCAGGCGCT
GGTGATGGCCGGCGCGGTGGTCGTCGGCGAGGCGCGGGCGGACAAGCCCGGGCAGCTGGTGGACCCCGAGGCGCCCATCC
GCCTGAAGGACGGGGCCGCGCCGCAGCGCTACGTCTCGCGCGGCGCGCTCAAGCTGGAGAAGGCGCTCGAGGTGTTCCCG
GCGGTCGACCCACGCGGCCGGACCTGCGCCGACCTGGGCGCGTCCACCGGCGGCTTCACCGACCTGCTGCTCCAGCGCGG
CGCCGCGAAGGTGTACGCGGTCGACGTGGGCTACGGGCAGCTCCACCCGCGGCTGCGCGCCGATCCGCGCGTGGTGGTGC
GGGAGCGCGAGAACGCGCGGCAGCTCACGTCCGAGGCCCTGGGCGAGCGGGTCGAGCTGGTGGTCGGGGATCTGTCCTTC
ATCTCGCTGCGCCTCATCCTCCCGGCGGTGAAGGCAATCCTCCTCCCGGGCGGCCAGGCGGTGCTGCTCGTGAAGCCCCA
GTTCGAGGTGGGCAAGGGCGAGGTGGGGAAGGGCGGCGTGGTGCGCGACGACGCCAAGCGGCGCGCCGCGCTGGACGGGA
TCGCCGCCGCGGCGGCCGGCCTCGGGTTCGAGGTGCTGGGCCACGCCGAGTCGCCCATCGAGGGGCCCGCGGGCAACCGC
GAGTGGCTGCTGGTGCTGCGCCTGCCGTGA

Upstream 100 bases:

>100_bases
CCTCGCGCGAGCCCGCGAACGCGGGCGCGCGAGGTCACGGGTCCCGCGCAGCAGGGTGGGGCCCCGCGGAGCTCCGCTCC
GCGGGGCGGGGCGCAGCCCC

Downstream 100 bases:

>100_bases
CCCGCCCGCCGCCTCGGCGGGGCTGCGCTCCGGCGCGCGACGCTCCGCCGGGCCCCGCGTGAGCGGCCTGCCGCGCAGGC
GTTCCAGGGCTGCGCCGGCC

Product: hemolysin A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 249; Mature: 249

Protein sequence:

>249_residues
MKKKRERIDVLLVARGLAESRTRAQALVMAGAVVVGEARADKPGQLVDPEAPIRLKDGAAPQRYVSRGALKLEKALEVFP
AVDPRGRTCADLGASTGGFTDLLLQRGAAKVYAVDVGYGQLHPRLRADPRVVVRERENARQLTSEALGERVELVVGDLSF
ISLRLILPAVKAILLPGGQAVLLVKPQFEVGKGEVGKGGVVRDDAKRRAALDGIAAAAAGLGFEVLGHAESPIEGPAGNR
EWLLVLRLP

Sequences:

>Translated_249_residues
MKKKRERIDVLLVARGLAESRTRAQALVMAGAVVVGEARADKPGQLVDPEAPIRLKDGAAPQRYVSRGALKLEKALEVFP
AVDPRGRTCADLGASTGGFTDLLLQRGAAKVYAVDVGYGQLHPRLRADPRVVVRERENARQLTSEALGERVELVVGDLSF
ISLRLILPAVKAILLPGGQAVLLVKPQFEVGKGEVGKGGVVRDDAKRRAALDGIAAAAAGLGFEVLGHAESPIEGPAGNR
EWLLVLRLP
>Mature_249_residues
MKKKRERIDVLLVARGLAESRTRAQALVMAGAVVVGEARADKPGQLVDPEAPIRLKDGAAPQRYVSRGALKLEKALEVFP
AVDPRGRTCADLGASTGGFTDLLLQRGAAKVYAVDVGYGQLHPRLRADPRVVVRERENARQLTSEALGERVELVVGDLSF
ISLRLILPAVKAILLPGGQAVLLVKPQFEVGKGEVGKGGVVRDDAKRRAALDGIAAAAAGLGFEVLGHAESPIEGPAGNR
EWLLVLRLP

Specific function: Unknown

COG id: COG1189

COG function: function code J; Predicted rRNA methylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004538
- InterPro:   IPR002877
- InterPro:   IPR002942 [H]

Pfam domain/function: PF01728 FtsJ; PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 26447; Mature: 26447

Theoretical pI: Translated: 10.42; Mature: 10.42

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKKRERIDVLLVARGLAESRTRAQALVMAGAVVVGEARADKPGQLVDPEAPIRLKDGAA
CCCHHHHHHEEEEEHHHHHHHHHHHHHHHHCEEEEECCCCCCCCCEECCCCCEEECCCCC
PQRYVSRGALKLEKALEVFPAVDPRGRTCADLGASTGGFTDLLLQRGAAKVYAVDVGYGQ
HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCEEEEEECCCCC
LHPRLRADPRVVVRERENARQLTSEALGERVELVVGDLSFISLRLILPAVKAILLPGGQA
CCCCCCCCCEEEEECCHHHHHHHHHHHHHEEEEEECCHHHHHHHHHHHHHHHHCCCCCCE
VLLVKPQFEVGKGEVGKGGVVRDDAKRRAALDGIAAAAAGLGFEVLGHAESPIEGPAGNR
EEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHEECCCCCCCCCCCCCC
EWLLVLRLP
EEEEEEECC
>Mature Secondary Structure
MKKKRERIDVLLVARGLAESRTRAQALVMAGAVVVGEARADKPGQLVDPEAPIRLKDGAA
CCCHHHHHHEEEEEHHHHHHHHHHHHHHHHCEEEEECCCCCCCCCEECCCCCEEECCCCC
PQRYVSRGALKLEKALEVFPAVDPRGRTCADLGASTGGFTDLLLQRGAAKVYAVDVGYGQ
HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCEEEEEECCCCC
LHPRLRADPRVVVRERENARQLTSEALGERVELVVGDLSFISLRLILPAVKAILLPGGQA
CCCCCCCCCEEEEECCHHHHHHHHHHHHHEEEEEECCHHHHHHHHHHHHHHHHCCCCCCE
VLLVKPQFEVGKGEVGKGGVVRDDAKRRAALDGIAAAAAGLGFEVLGHAESPIEGPAGNR
EEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHEECCCCCCCCCCCCCC
EWLLVLRLP
EEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377; 2507400 [H]