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The map label for this gene is deoC [H]

Identifier: 220916068

GI number: 220916068

Start: 1074546

End: 1075229

Strand: Direct

Name: deoC [H]

Synonym: A2cp1_0955

Alternate gene names: 220916068

Gene position: 1074546-1075229 (Clockwise)

Preceding gene: 220916067

Following gene: 220916069

Centisome position: 21.37

GC content: 78.95

Gene sequence:

>684_bases
ATGCGCTCCGTTCCCCCCGAGGCGATCCGCACCCCGCGCGATCTCGCGCCGTACCTCGACCACACCGTGCTCGCGCCGGA
GGCGACGCTCGAGGACGTGCGCCGCGCCTGCGCCGAGGCCCGCGCGCACCGGTTCGCGGGGGTGTGCGTGCGCGCCGACG
CGGTGGCGGAGGTCCGGCGCGCGCTGGAGGGCAGCGGCGTGCGGGCGGTCGCGGTGGTGGACTTCCCGCGCGGCGAGGCG
GACACCGGCGCGCGGGTGGCGGAGGCGCGCGAGGCGGCGCGGCTGGGCGCGGAGGAGCTGGACCTCGTCATCCGCCTCCC
GGCGCTGCTCGCCGGCCGGCACGAGGACGTGCTCCAGGACCTGCGCGCGGTGATCGGGGCGGTGGGGGTGCCGGTGAAGG
TGATCCTCGAGACCTCGCGCCTCACCCGCGACCAGAGGGTCGTCGCGGCGGCGCTGGCACGCTGCGCCGGCGCCGCGTAC
GTGAAGACCTCCACCGGGTTCGCCGGCGGCGGCGCCACGGTGGAGGACGTGGCCCTGCTGCGCGCGGTCGTGGGCGAGCA
GGTGGGGGTCAAGGCGTCGGGCGGGATCCGCACCGCGGCGGCGGCGCGGGCGATGCTCGCGGCCGGGGCGAGCCGCATCG
GCGCCTCCGGCTCGGTGGCGCTGGTGTCCGGCGCCTTCCCGTGA

Upstream 100 bases:

>100_bases
CGACGCCGAGGACGAGGAGGCGGAGGACTGCGGCGAGCCGCCCGCCGGCGACGGCGTGGTGTCGCTGGGCGGCGCCCGCG
GCGGGCGGTAGCATCCGCGC

Downstream 100 bases:

>100_bases
CCGCGCCGCGCGGCGCCCCTGCGGTTAGGATCCGGGCATGAACCGCCGCCTCGTCATCCTGGTCGCCGACAGCGCCGGCT
GCGGCGCGCTCCCCGACGCC

Product: deoxyribose-phosphate aldolase

Products: NA

Alternate protein names: Phosphodeoxyriboaldolase; DERA; Deoxyriboaldolase [H]

Number of amino acids: Translated: 227; Mature: 227

Protein sequence:

>227_residues
MRSVPPEAIRTPRDLAPYLDHTVLAPEATLEDVRRACAEARAHRFAGVCVRADAVAEVRRALEGSGVRAVAVVDFPRGEA
DTGARVAEAREAARLGAEELDLVIRLPALLAGRHEDVLQDLRAVIGAVGVPVKVILETSRLTRDQRVVAAALARCAGAAY
VKTSTGFAGGGATVEDVALLRAVVGEQVGVKASGGIRTAAAARAMLAAGASRIGASGSVALVSGAFP

Sequences:

>Translated_227_residues
MRSVPPEAIRTPRDLAPYLDHTVLAPEATLEDVRRACAEARAHRFAGVCVRADAVAEVRRALEGSGVRAVAVVDFPRGEA
DTGARVAEAREAARLGAEELDLVIRLPALLAGRHEDVLQDLRAVIGAVGVPVKVILETSRLTRDQRVVAAALARCAGAAY
VKTSTGFAGGGATVEDVALLRAVVGEQVGVKASGGIRTAAAARAMLAAGASRIGASGSVALVSGAFP
>Mature_227_residues
MRSVPPEAIRTPRDLAPYLDHTVLAPEATLEDVRRACAEARAHRFAGVCVRADAVAEVRRALEGSGVRAVAVVDFPRGEA
DTGARVAEAREAARLGAEELDLVIRLPALLAGRHEDVLQDLRAVIGAVGVPVKVILETSRLTRDQRVVAAALARCAGAAY
VKTSTGFAGGGATVEDVALLRAVVGEQVGVKASGGIRTAAAARAMLAAGASRIGASGSVALVSGAFP

Specific function: Nucleotide and deoxyribonucleotide catabolism. [C]

COG id: COG0274

COG function: function code F; Deoxyribose-phosphate aldolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the deoC/fbaB aldolase family. DeoC type 1 subfamily [H]

Homologues:

Organism=Homo sapiens, GI116063554, Length=225, Percent_Identity=29.7777777777778, Blast_Score=74, Evalue=8e-14,
Organism=Escherichia coli, GI1790841, Length=213, Percent_Identity=32.3943661971831, Blast_Score=84, Evalue=6e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR011343
- InterPro:   IPR002915
- InterPro:   IPR022979 [H]

Pfam domain/function: PF01791 DeoC [H]

EC number: =4.1.2.4 [H]

Molecular weight: Translated: 23272; Mature: 23272

Theoretical pI: Translated: 8.92; Mature: 8.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSVPPEAIRTPRDLAPYLDHTVLAPEATLEDVRRACAEARAHRFAGVCVRADAVAEVRR
CCCCCCHHHCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALEGSGVRAVAVVDFPRGEADTGARVAEAREAARLGAEELDLVIRLPALLAGRHEDVLQD
HHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHH
LRAVIGAVGVPVKVILETSRLTRDQRVVAAALARCAGAAYVKTSTGFAGGGATVEDVALL
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCHHHHHHHH
RAVVGEQVGVKASGGIRTAAAARAMLAAGASRIGASGSVALVSGAFP
HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCC
>Mature Secondary Structure
MRSVPPEAIRTPRDLAPYLDHTVLAPEATLEDVRRACAEARAHRFAGVCVRADAVAEVRR
CCCCCCHHHCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALEGSGVRAVAVVDFPRGEADTGARVAEAREAARLGAEELDLVIRLPALLAGRHEDVLQD
HHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHH
LRAVIGAVGVPVKVILETSRLTRDQRVVAAALARCAGAAYVKTSTGFAGGGATVEDVALL
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCHHHHHHHH
RAVVGEQVGVKASGGIRTAAAARAMLAAGASRIGASGSVALVSGAFP
HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA