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The map label for this gene is ydcN [H]

Identifier: 220916034

GI number: 220916034

Start: 1041343

End: 1042125

Strand: Direct

Name: ydcN [H]

Synonym: A2cp1_0921

Alternate gene names: 220916034

Gene position: 1041343-1042125 (Clockwise)

Preceding gene: 220916031

Following gene: 220916035

Centisome position: 20.71

GC content: 71.78

Gene sequence:

>783_bases
ATGGCGCAGGCGAGGTTGCAGTCGTCCGGGTCGGTGACGAGCGTGAGCCGCCACGGGCCGGCGGCGCTGGCGGAGCGCGT
TGACAACGCCTCCGTTGTAACGGAAAACCATCGGTTCATGAAGACCGCCCGCGACACGCAGAAGCGACCCCGGCGTCCGG
CCGCGGCACCGCCCGAGGCCCGCTCCGCCCCCGAGCCGGGCGAGGTGGCGCCCGCCGGCAAGGACCTCACGCCGGTCGTC
GGGACCAACCTCCGCCGGCTGCGCACCCAGCGCGACCTGTCGCTGGAGAAGCTCTCGAAGCTGTCCGGGGTCTCTCGCGC
GATGCTCGGCCAGATCGAGCTCGGGCAGAGCGCCCCGACCATCAACGTGCTCTGGAAGATCTCGTCCGCCTTGAGCGTGC
CGTTCTCGGCGCTCATCACCGCGCGCAGCACCGGCGGCCTGCACGTGCTCCGGGCCGAGCACGCGAAGGTGCTGAGCAGC
CACGACGGCAGCTACTCCTCCCGGGCCCTGTTTCCGTTCGACGAGCCGCGCCGGGTGGAGTTCTACGAGCTGCGCATGGC
GCCGGGGAGCGTGGAGCGCGCCGACGCGCACAACCCCGGGACCATCGAGAACCTGGTGGTCGCCGCGGGCGCGGTGGAGA
TCGAGGTCCCCGGCCGCAAGGAGCAGCTCGGCACCGGGGACGCCATCGTGTTCCAGGCCGACGCGCCGCACGTGTACCGG
AGCCGGGCCGACGTCGAGACGGTCATGTACCTCGTGATGACCTACGCCGACACGGTGGGCTGA

Upstream 100 bases:

>100_bases
GCCGCGCCGCTCCTCCAGCACGCCGGCCGCGAGCGCCGGCGCCATGCGCCGCGGCGGCGAGCGCGGCCCGCCCCGCGCCC
GCGCCGCACCGCACGGGCAC

Downstream 100 bases:

>100_bases
AGCGATTCTCTCTGGGTGAAGCCCCCGGCGACCACCTCCCCCGCGGGCACGACGGGGTGTCGAGGGTCGCGGCGTCGTGG
GACGCCGCCGCTCGCCGCCG

Product: XRE family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 259

Protein sequence:

>260_residues
MAQARLQSSGSVTSVSRHGPAALAERVDNASVVTENHRFMKTARDTQKRPRRPAAAPPEARSAPEPGEVAPAGKDLTPVV
GTNLRRLRTQRDLSLEKLSKLSGVSRAMLGQIELGQSAPTINVLWKISSALSVPFSALITARSTGGLHVLRAEHAKVLSS
HDGSYSSRALFPFDEPRRVEFYELRMAPGSVERADAHNPGTIENLVVAAGAVEIEVPGRKEQLGTGDAIVFQADAPHVYR
SRADVETVMYLVMTYADTVG

Sequences:

>Translated_260_residues
MAQARLQSSGSVTSVSRHGPAALAERVDNASVVTENHRFMKTARDTQKRPRRPAAAPPEARSAPEPGEVAPAGKDLTPVV
GTNLRRLRTQRDLSLEKLSKLSGVSRAMLGQIELGQSAPTINVLWKISSALSVPFSALITARSTGGLHVLRAEHAKVLSS
HDGSYSSRALFPFDEPRRVEFYELRMAPGSVERADAHNPGTIENLVVAAGAVEIEVPGRKEQLGTGDAIVFQADAPHVYR
SRADVETVMYLVMTYADTVG
>Mature_259_residues
AQARLQSSGSVTSVSRHGPAALAERVDNASVVTENHRFMKTARDTQKRPRRPAAAPPEARSAPEPGEVAPAGKDLTPVVG
TNLRRLRTQRDLSLEKLSKLSGVSRAMLGQIELGQSAPTINVLWKISSALSVPFSALITARSTGGLHVLRAEHAKVLSSH
DGSYSSRALFPFDEPRRVEFYELRMAPGSVERADAHNPGTIENLVVAAGAVEIEVPGRKEQLGTGDAIVFQADAPHVYRS
RADVETVMYLVMTYADTVG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787704, Length=178, Percent_Identity=35.9550561797753, Blast_Score=119, Evalue=1e-28,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013096
- InterPro:   IPR011051
- InterPro:   IPR001387
- InterPro:   IPR010982
- InterPro:   IPR014710 [H]

Pfam domain/function: PF07883 Cupin_2; PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 27985; Mature: 27854

Theoretical pI: Translated: 9.93; Mature: 9.93

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQARLQSSGSVTSVSRHGPAALAERVDNASVVTENHRFMKTARDTQKRPRRPAAAPPEA
CCCCCCCCCCCEEEECCCCHHHHHHHCCCCEEEECCHHHHHHHHHHHHCCCCCCCCCCCC
RSAPEPGEVAPAGKDLTPVVGTNLRRLRTQRDLSLEKLSKLSGVSRAMLGQIELGQSAPT
CCCCCCCCCCCCCCCCCCHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCE
INVLWKISSALSVPFSALITARSTGGLHVLRAEHAKVLSSHDGSYSSRALFPFDEPRRVE
EEEEEEEHHHHHCCHHHHEEECCCCCEEEEEHHHHHHHHCCCCCCCCCEECCCCCCCCEE
FYELRMAPGSVERADAHNPGTIENLVVAAGAVEIEVPGRKEQLGTGDAIVFQADAPHVYR
EEEEEECCCCCCCCCCCCCCCHHHHEEECCEEEEECCCCHHHCCCCCEEEEECCCCHHHH
SRADVETVMYLVMTYADTVG
HHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
AQARLQSSGSVTSVSRHGPAALAERVDNASVVTENHRFMKTARDTQKRPRRPAAAPPEA
CCCCCCCCCCEEEECCCCHHHHHHHCCCCEEEECCHHHHHHHHHHHHCCCCCCCCCCCC
RSAPEPGEVAPAGKDLTPVVGTNLRRLRTQRDLSLEKLSKLSGVSRAMLGQIELGQSAPT
CCCCCCCCCCCCCCCCCCHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCE
INVLWKISSALSVPFSALITARSTGGLHVLRAEHAKVLSSHDGSYSSRALFPFDEPRRVE
EEEEEEEHHHHHCCHHHHEEECCCCCEEEEEHHHHHHHHCCCCCCCCCEECCCCCCCCEE
FYELRMAPGSVERADAHNPGTIENLVVAAGAVEIEVPGRKEQLGTGDAIVFQADAPHVYR
EEEEEECCCCCCCCCCCCCCCHHHHEEECCEEEEECCCCHHHCCCCCEEEEECCCCHHHH
SRADVETVMYLVMTYADTVG
HHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]