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The map label for this gene is nifU [H]

Identifier: 220916011

GI number: 220916011

Start: 1016858

End: 1017307

Strand: Direct

Name: nifU [H]

Synonym: A2cp1_0897

Alternate gene names: 220916011

Gene position: 1016858-1017307 (Clockwise)

Preceding gene: 220916010

Following gene: 220916012

Centisome position: 20.22

GC content: 72.0

Gene sequence:

>450_bases
GTGTCGGAGCTGAGCGATCTGTACCAGGAGGTGGTCCTCGACCACGGCAAGCGGCCGCGCAACTTCGGTCCGCTGCCAGG
GGAGACCCACCACGCCGAGGGGCTGAACCCGCTCTGCGGGGATCACTTCGTGGTCCACGCCAGGGTGGACGGTGGCCGGC
TGGCCGAGGTGCGCTTCGAGGGGAGCGGCTGCGCCATCTCGAAGGCGTCCGCCTCGGTGATGACCGGGGTGGTGAAGGGC
AAGACCGCCGAGGAGGTGGACCGGATCTTCGAGCGCTTCCACCGGCTGGTGACCGAGGGCCCGGCGCCGGAGGACGAGGA
GGCGCTGGGCAAGCTGGCGGTGTTCGGCGGGGTGCACGAGTACCCCACGCGCGTGAAGTGCGCGAGCCTCGCGTGGCACG
CGCTCCGCCAGGCGCTGCGCGGCGAGGACGCGCCGGTCAGCACCGAGTAG

Upstream 100 bases:

>100_bases
CGGGCCGACGTGGACGCGCTCGTCCGCGGCCTGCACGCGGTCCGGGAGGTGTTCGCGTGACCGCGTCCCGTCGCCGCCGA
CCGTCCCAGGGAGCCTGCCC

Downstream 100 bases:

>100_bases
CGAGCACCCCCGAGGCAGCGCGCCGAGGCACGCAGGAGCGGACATGGATCGCACACCCACCCATACCTATCGTGACGTCG
AGGCCGTGCAGGTGCCCAGC

Product: SUF system FeS assembly protein, NifU family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 149; Mature: 148

Protein sequence:

>149_residues
MSELSDLYQEVVLDHGKRPRNFGPLPGETHHAEGLNPLCGDHFVVHARVDGGRLAEVRFEGSGCAISKASASVMTGVVKG
KTAEEVDRIFERFHRLVTEGPAPEDEEALGKLAVFGGVHEYPTRVKCASLAWHALRQALRGEDAPVSTE

Sequences:

>Translated_149_residues
MSELSDLYQEVVLDHGKRPRNFGPLPGETHHAEGLNPLCGDHFVVHARVDGGRLAEVRFEGSGCAISKASASVMTGVVKG
KTAEEVDRIFERFHRLVTEGPAPEDEEALGKLAVFGGVHEYPTRVKCASLAWHALRQALRGEDAPVSTE
>Mature_148_residues
SELSDLYQEVVLDHGKRPRNFGPLPGETHHAEGLNPLCGDHFVVHARVDGGRLAEVRFEGSGCAISKASASVMTGVVKGK
TAEEVDRIFERFHRLVTEGPAPEDEEALGKLAVFGGVHEYPTRVKCASLAWHALRQALRGEDAPVSTE

Specific function: May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins (Potential) [H]

COG id: COG0822

COG function: function code C; NifU homolog involved in Fe-S cluster formation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nifU family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002871
- InterPro:   IPR011341 [H]

Pfam domain/function: PF01592 NifU_N [H]

EC number: NA

Molecular weight: Translated: 16169; Mature: 16038

Theoretical pI: Translated: 6.08; Mature: 6.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSELSDLYQEVVLDHGKRPRNFGPLPGETHHAEGLNPLCGDHFVVHARVDGGRLAEVRFE
CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEEEC
GSGCAISKASASVMTGVVKGKTAEEVDRIFERFHRLVTEGPAPEDEEALGKLAVFGGVHE
CCCCEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHH
YPTRVKCASLAWHALRQALRGEDAPVSTE
CCCHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
SELSDLYQEVVLDHGKRPRNFGPLPGETHHAEGLNPLCGDHFVVHARVDGGRLAEVRFE
CHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEEEC
GSGCAISKASASVMTGVVKGKTAEEVDRIFERFHRLVTEGPAPEDEEALGKLAVFGGVHE
CCCCEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHH
YPTRVKCASLAWHALRQALRGEDAPVSTE
CCCHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]