Click here to switch to the map view.

The map label for this gene is sufC [C]

Identifier: 220916008

GI number: 220916008

Start: 1013415

End: 1014221

Strand: Direct

Name: sufC [C]

Synonym: A2cp1_0894

Alternate gene names: 220916008

Gene position: 1013415-1014221 (Clockwise)

Preceding gene: 220916007

Following gene: 220916009

Centisome position: 20.15

GC content: 72.86

Gene sequence:

>807_bases
ATGGCCGTGAAGGACCACATCATGCTGAGCATCCAGGGGCTGCGCGCGAAGGTCGCCGACCGCGACATCCTGAAGGGCGT
GGACCTCGAGATCCGCGCGGGCGAGATCCACGCGATCATGGGGCCGAACGGCTCGGGCAAGTCCACGCTGGCGGGCGTGC
TGGCCGGCCGCGAGGCGTACGAGGTCACCGGCGGCACCGCCACGTACCTGGGGCAGGACCTGCTCGCGCTCGCGCCCGAG
GCGCGCGCCGCGGCGGGCGTGTTCCTCGGGTTCCAGTACCCGGTGGAGATCCCCGGGGTCGGCAACCTCTACTTCCTGCG
CACCGCGCTGAACGCGATCCGCCGGGCGCGCGGCGAGGACGAGCTGGACGCGATGGACTTCCTCGCGCTGGCCCGCGAGA
AGATGAAGCTGGTGGACCTCGACCCGGCGTTCGGCAGCCGCTCGGTGAACGAGGGCTTCTCCGGCGGCGAGAAGAAGCGC
AACGAGATCTTCCAGATGGCGGTGCTGGAGCCGCGCCTCGCCATCCTCGACGAGATCGACTCCGGCCTCGACATCGACGC
GCTGCGGGTGGTGTCGCGCGGCGTGAACGCGCTGCGCCGGGCCGACCGCGCCGTGCTGCTCGTGACGCACTACAAGCGCC
TGCTCGAGCACGTGGCGCCGGACCGCATCCACGTCATGGCCGGCGGGCGCATCGTGCGCTCCGGCGGGCCGGAGCTGGCC
GACGAGCTGGAGCGCACCGGCTACGCCTGGGTGGACGGCGCGCGGCCGGAGGTGGAGCGCGCCGCCAGCGCGGGGGCGCT
GTCGTGA

Upstream 100 bases:

>100_bases
TCGAGGGGAGCGTCGGATGATGCCCAGGAGCTTCGGAGCGTTCCGATCACCGCGCAGAAGCGCCGTGGGCATGTCGCTGG
AAGGGAGCGTCGGGTAGGCC

Downstream 100 bases:

>100_bases
CCCCGGCGGAGCAGAGCCTGGCGGCCGCGTTCCGCGGCGGCGCGGGCGAGCCGGCCTGGCTGGCGGACGCGCGCGCGGGT
GCGCTCGCGGCCTTCCGCGC

Product: FeS assembly ATPase SufC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 268; Mature: 267

Protein sequence:

>268_residues
MAVKDHIMLSIQGLRAKVADRDILKGVDLEIRAGEIHAIMGPNGSGKSTLAGVLAGREAYEVTGGTATYLGQDLLALAPE
ARAAAGVFLGFQYPVEIPGVGNLYFLRTALNAIRRARGEDELDAMDFLALAREKMKLVDLDPAFGSRSVNEGFSGGEKKR
NEIFQMAVLEPRLAILDEIDSGLDIDALRVVSRGVNALRRADRAVLLVTHYKRLLEHVAPDRIHVMAGGRIVRSGGPELA
DELERTGYAWVDGARPEVERAASAGALS

Sequences:

>Translated_268_residues
MAVKDHIMLSIQGLRAKVADRDILKGVDLEIRAGEIHAIMGPNGSGKSTLAGVLAGREAYEVTGGTATYLGQDLLALAPE
ARAAAGVFLGFQYPVEIPGVGNLYFLRTALNAIRRARGEDELDAMDFLALAREKMKLVDLDPAFGSRSVNEGFSGGEKKR
NEIFQMAVLEPRLAILDEIDSGLDIDALRVVSRGVNALRRADRAVLLVTHYKRLLEHVAPDRIHVMAGGRIVRSGGPELA
DELERTGYAWVDGARPEVERAASAGALS
>Mature_267_residues
AVKDHIMLSIQGLRAKVADRDILKGVDLEIRAGEIHAIMGPNGSGKSTLAGVLAGREAYEVTGGTATYLGQDLLALAPEA
RAAAGVFLGFQYPVEIPGVGNLYFLRTALNAIRRARGEDELDAMDFLALAREKMKLVDLDPAFGSRSVNEGFSGGEKKRN
EIFQMAVLEPRLAILDEIDSGLDIDALRVVSRGVNALRRADRAVLLVTHYKRLLEHVAPDRIHVMAGGRIVRSGGPELAD
ELERTGYAWVDGARPEVERAASAGALS

Specific function: Unknown

COG id: COG0396

COG function: function code O; ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Escherichia coli, GI1787972, Length=244, Percent_Identity=59.8360655737705, Blast_Score=309, Evalue=1e-85,
Organism=Escherichia coli, GI1786698, Length=212, Percent_Identity=30.188679245283, Blast_Score=77, Evalue=9e-16,
Organism=Escherichia coli, GI1788225, Length=241, Percent_Identity=32.3651452282158, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1789864, Length=247, Percent_Identity=29.1497975708502, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1787370, Length=230, Percent_Identity=26.0869565217391, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1789891, Length=223, Percent_Identity=31.390134529148, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1786319, Length=191, Percent_Identity=29.3193717277487, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1790525, Length=223, Percent_Identity=30.4932735426009, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI1787792, Length=231, Percent_Identity=27.2727272727273, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1788761, Length=231, Percent_Identity=27.2727272727273, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI87081791, Length=243, Percent_Identity=27.9835390946502, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI87081782, Length=230, Percent_Identity=26.9565217391304, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1790467, Length=216, Percent_Identity=30.5555555555556, Blast_Score=62, Evalue=5e-11,
Organism=Escherichia coli, GI87081709, Length=233, Percent_Identity=24.8927038626609, Blast_Score=61, Evalue=9e-11,
Organism=Caenorhabditis elegans, GI193202349, Length=223, Percent_Identity=30.9417040358744, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17510237, Length=216, Percent_Identity=30.0925925925926, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24643674, Length=250, Percent_Identity=23.6, Blast_Score=64, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR010230 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 28838; Mature: 28707

Theoretical pI: Translated: 6.06; Mature: 6.06

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVKDHIMLSIQGLRAKVADRDILKGVDLEIRAGEIHAIMGPNGSGKSTLAGVLAGREAY
CCCCCCEEEEEHHHHHHHHHHHHHCCCCEEEECCCEEEEECCCCCCHHHHHHHHHCCCCE
EVTGGTATYLGQDLLALAPEARAAAGVFLGFQYPVEIPGVGNLYFLRTALNAIRRARGED
EECCCHHHHHHHHHHHHCCCHHHHHHEEEEEECCEECCCCCCHHHHHHHHHHHHHHCCCC
ELDAMDFLALAREKMKLVDLDPAFGSRSVNEGFSGGEKKRNEIFQMAVLEPRLAILDEID
HHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHC
SGLDIDALRVVSRGVNALRRADRAVLLVTHYKRLLEHVAPDRIHVMAGGRIVRSGGPELA
CCCCHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHCCCCEEEEEECCEEEECCCHHHH
DELERTGYAWVDGARPEVERAASAGALS
HHHHHCCCEEECCCCHHHHHHHCCCCCC
>Mature Secondary Structure 
AVKDHIMLSIQGLRAKVADRDILKGVDLEIRAGEIHAIMGPNGSGKSTLAGVLAGREAY
CCCCCEEEEEHHHHHHHHHHHHHCCCCEEEECCCEEEEECCCCCCHHHHHHHHHCCCCE
EVTGGTATYLGQDLLALAPEARAAAGVFLGFQYPVEIPGVGNLYFLRTALNAIRRARGED
EECCCHHHHHHHHHHHHCCCHHHHHHEEEEEECCEECCCCCCHHHHHHHHHHHHHHCCCC
ELDAMDFLALAREKMKLVDLDPAFGSRSVNEGFSGGEKKRNEIFQMAVLEPRLAILDEID
HHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHC
SGLDIDALRVVSRGVNALRRADRAVLLVTHYKRLLEHVAPDRIHVMAGGRIVRSGGPELA
CCCCHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHCCCCEEEEEECCEEEECCCHHHH
DELERTGYAWVDGARPEVERAASAGALS
HHHHHCCCEEECCCCHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]