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The map label for this gene is ygbT [H]

Identifier: 220915900

GI number: 220915900

Start: 882459

End: 883343

Strand: Direct

Name: ygbT [H]

Synonym: A2cp1_0784

Alternate gene names: 220915900

Gene position: 882459-883343 (Clockwise)

Preceding gene: 220915899

Following gene: 220915901

Centisome position: 17.55

GC content: 70.73

Gene sequence:

>885_bases
GTGCTGAAGGGCAGGCTCGGCCTCGAGACGGCGCGGATCCCGCAAGGCGACCGCCACGGCCTGCTCTGGCTGTCGCGCGG
CAGCCTGTACGTCGAGGATGGGACGCTCCGCTTCCGCACCGCCGGCTGGGCCGAGCTCCCAGCCGGCGACTATGCCATAC
CGTTTCAGATGGTCACCGCCGTGCTCCTCGAGCCGGGGACCACCGTCAGCCACGACGCGCTCAGGCTGCTCGCGCGCCAC
GGGACGGGCCTCGTCGCCATCGGCGAGGAGGGCACGCGCTTCTACGCGAGCATGCCGTTCGGCCCGGACGCCTCGGCGCT
CGCCCGCCGGCAGGTGATGGCGTGGGCGAGCGCCGCGGACGGTCGGTTGCGCGTCGCGCGTCGCATGTACGCCTGGCGCT
TCGGCGAGGTTCTGCCCGACGAGGACATCACCGTCCTACGCGGTATCGAGGGTGCCCGGATGCGCGAGATCTACCGGCGC
CTCGCAGAGCAGTACGGCGTTCCATGGTCCGGTCGGCGCTACGACCGGCAGCGCCCGGACCAGAACGATCCCGTGAACCA
GGCGATCAACCACGCCGCGAGCGCGGTCGAGGCCGCGGCGCTCGTGGCCGTCGCCGTGACGGGGACGATCCCCCAACTCG
GCTTCATCCACGAGGACTCGGGGAACGCGTTCGCCCTCGACGTCGCCGACCTGTTTCGCTCGGCGATAGCCCTCCCGGCC
GCCTTCTCGGCCGTGCGGGAGTGTGCCAAGGATCCCCGCAAGCCACTCGAGCGCACGGCAAGGCGCGCCGCGGGTCGTCT
CCTGCAGCAGAAGGACGTCATCCCCGAGATGATCGACCGCATCAAGGAGATGTTCGATGCCGATGACGGTCATCGTGACC
CGTGA

Upstream 100 bases:

>100_bases
GCGGACCCGGCGGCGTTCGGCGCGCTGCTCGCGCGGGGGGTGGGCCGGCATCGGGGGTTCGGCTTCGGGATGCTGCTGCT
TCGGCCGCCGGGGTGACCGG

Downstream 100 bases:

>100_bases
CGTTCCGGATCGTTTTCGAGGCTTCCTCGCGTCGGTCGCGCTGGAGATCGCGCCCGGCGTCTATACGGCGCCGGACATGA
CTGCATCGGTGCGAGAGCGC

Product: CRISPR-associated protein Cas1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 294

Protein sequence:

>294_residues
MLKGRLGLETARIPQGDRHGLLWLSRGSLYVEDGTLRFRTAGWAELPAGDYAIPFQMVTAVLLEPGTTVSHDALRLLARH
GTGLVAIGEEGTRFYASMPFGPDASALARRQVMAWASAADGRLRVARRMYAWRFGEVLPDEDITVLRGIEGARMREIYRR
LAEQYGVPWSGRRYDRQRPDQNDPVNQAINHAASAVEAAALVAVAVTGTIPQLGFIHEDSGNAFALDVADLFRSAIALPA
AFSAVRECAKDPRKPLERTARRAAGRLLQQKDVIPEMIDRIKEMFDADDGHRDP

Sequences:

>Translated_294_residues
MLKGRLGLETARIPQGDRHGLLWLSRGSLYVEDGTLRFRTAGWAELPAGDYAIPFQMVTAVLLEPGTTVSHDALRLLARH
GTGLVAIGEEGTRFYASMPFGPDASALARRQVMAWASAADGRLRVARRMYAWRFGEVLPDEDITVLRGIEGARMREIYRR
LAEQYGVPWSGRRYDRQRPDQNDPVNQAINHAASAVEAAALVAVAVTGTIPQLGFIHEDSGNAFALDVADLFRSAIALPA
AFSAVRECAKDPRKPLERTARRAAGRLLQQKDVIPEMIDRIKEMFDADDGHRDP
>Mature_294_residues
MLKGRLGLETARIPQGDRHGLLWLSRGSLYVEDGTLRFRTAGWAELPAGDYAIPFQMVTAVLLEPGTTVSHDALRLLARH
GTGLVAIGEEGTRFYASMPFGPDASALARRQVMAWASAADGRLRVARRMYAWRFGEVLPDEDITVLRGIEGARMREIYRR
LAEQYGVPWSGRRYDRQRPDQNDPVNQAINHAASAVEAAALVAVAVTGTIPQLGFIHEDSGNAFALDVADLFRSAIALPA
AFSAVRECAKDPRKPLERTARRAAGRLLQQKDVIPEMIDRIKEMFDADDGHRDP

Specific function: Unknown

COG id: COG1518

COG function: function code L; Uncharacterized protein predicted to be involved in DNA repair

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789113, Length=281, Percent_Identity=35.5871886120996, Blast_Score=155, Evalue=3e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002729
- InterPro:   IPR019851 [H]

Pfam domain/function: PF01867 DUF48 [H]

EC number: NA

Molecular weight: Translated: 32471; Mature: 32471

Theoretical pI: Translated: 8.45; Mature: 8.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKGRLGLETARIPQGDRHGLLWLSRGSLYVEDGTLRFRTAGWAELPAGDYAIPFQMVTA
CCCCCCCCCCCCCCCCCCCCEEEEECCCEEEECCEEEEEECCCCCCCCCCCCHHHHHHHH
VLLEPGTTVSHDALRLLARHGTGLVAIGEEGTRFYASMPFGPDASALARRQVMAWASAAD
HHHCCCCCCHHHHHHHHHHCCCCEEEECCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCC
GRLRVARRMYAWRFGEVLPDEDITVLRGIEGARMREIYRRLAEQYGVPWSGRRYDRQRPD
CHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
QNDPVNQAINHAASAVEAAALVAVAVTGTIPQLGFIHEDSGNAFALDVADLFRSAIALPA
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCEEEEEHHHHHHHHHHHHH
AFSAVRECAKDPRKPLERTARRAAGRLLQQKDVIPEMIDRIKEMFDADDGHRDP
HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MLKGRLGLETARIPQGDRHGLLWLSRGSLYVEDGTLRFRTAGWAELPAGDYAIPFQMVTA
CCCCCCCCCCCCCCCCCCCCEEEEECCCEEEECCEEEEEECCCCCCCCCCCCHHHHHHHH
VLLEPGTTVSHDALRLLARHGTGLVAIGEEGTRFYASMPFGPDASALARRQVMAWASAAD
HHHCCCCCCHHHHHHHHHHCCCCEEEECCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCC
GRLRVARRMYAWRFGEVLPDEDITVLRGIEGARMREIYRRLAEQYGVPWSGRRYDRQRPD
CHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
QNDPVNQAINHAASAVEAAALVAVAVTGTIPQLGFIHEDSGNAFALDVADLFRSAIALPA
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCEEEEEHHHHHHHHHHHHH
AFSAVRECAKDPRKPLERTARRAAGRLLQQKDVIPEMIDRIKEMFDADDGHRDP
HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]