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The map label for this gene is 220915876

Identifier: 220915876

GI number: 220915876

Start: 852338

End: 853099

Strand: Direct

Name: 220915876

Synonym: A2cp1_0760

Alternate gene names: NA

Gene position: 852338-853099 (Clockwise)

Preceding gene: 220915875

Following gene: 220915877

Centisome position: 16.95

GC content: 74.41

Gene sequence:

>762_bases
GTGGCCAAGGCCGTCCTCGCGGAGCTGCTCCGCTTCATCGCCGCCAACGAGGAGCTCCCGCGGACGCGCGCCCGGTACCC
GGGCTACGACCGCGACGCGCTCGGGCGGCTGCTCGCCGCCGCCGCCGACCGGGTGGAGGAGGCCGAGAAGGCGCGCGAGC
CGGCCCCGGGCGCGGGCTCGAAGGGCATCAAGGTCCGCAAGGTGTCCGACGTCGAGAAGGCGGCGCAGCGCGCGGCCGCC
GAGCTCGACGAGGCGATGGACCTCTCCAAGGCGGAGCGCGACCGGCGCAAGAAGGAGCGCGCCGAGCGCGAGGCCGCCGA
GCGCGCCGCCGCCGACGCCGCGGCCGCCGCCGAGGCGGCCCGGTGCACCCGCCTGTTCACCGACGGCGCGGCGCGCGGCA
ACCCCGGCCCGGCCGGCGCCGGCGCGGTCATCGTGAACGCCGACGGCCACATCGTGGCGAAGATCGGCAAGTTCCTGGGC
GACTCCACCAACAACGTCGCCGAGTACATGGGGCTCATCCTCGGGCTGAAGCGCGCCAAGGCCATGGGCATCAAGGAGCT
CGAGGTGCTGTCCGACTCCGAGCTGATGGTGAAGCAGCTCGCCGGCGACTACGCGGTGAAGGCGGATCACCTCCGCCCGC
TCCACGACGAGGCGCGCGCGCTCATCGCCGGCTTCGACCGCATCCAGGTCCGGCACGTGCCGCGCGAGGAGAACACGCTC
GCGGACGCGATGTCGAACCGCGCCATCGACGAGCGGCTGTAG

Upstream 100 bases:

>100_bases
CCTTGCAGCGGGCGAACTCGATCGAGACCTGCCCGAACTGCCACCGCATCATCTACGCGGCCGAGGCGGTCAACCCGCCG
GCGCCGCCGCCGGCCTAGCC

Downstream 100 bases:

>100_bases
CGTCGTCGACGCGGCGCCCGCCGCGCGCGGGCGCCGCCCTCCGTTCACCCACCGTTCACGTTCGCGCCCCGCGGCGCCGC
CCGCGGCGCGCGGTCGCGCG

Product: ribonuclease H

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 253; Mature: 252

Protein sequence:

>253_residues
MAKAVLAELLRFIAANEELPRTRARYPGYDRDALGRLLAAAADRVEEAEKAREPAPGAGSKGIKVRKVSDVEKAAQRAAA
ELDEAMDLSKAERDRRKKERAEREAAERAAADAAAAAEAARCTRLFTDGAARGNPGPAGAGAVIVNADGHIVAKIGKFLG
DSTNNVAEYMGLILGLKRAKAMGIKELEVLSDSELMVKQLAGDYAVKADHLRPLHDEARALIAGFDRIQVRHVPREENTL
ADAMSNRAIDERL

Sequences:

>Translated_253_residues
MAKAVLAELLRFIAANEELPRTRARYPGYDRDALGRLLAAAADRVEEAEKAREPAPGAGSKGIKVRKVSDVEKAAQRAAA
ELDEAMDLSKAERDRRKKERAEREAAERAAADAAAAAEAARCTRLFTDGAARGNPGPAGAGAVIVNADGHIVAKIGKFLG
DSTNNVAEYMGLILGLKRAKAMGIKELEVLSDSELMVKQLAGDYAVKADHLRPLHDEARALIAGFDRIQVRHVPREENTL
ADAMSNRAIDERL
>Mature_252_residues
AKAVLAELLRFIAANEELPRTRARYPGYDRDALGRLLAAAADRVEEAEKAREPAPGAGSKGIKVRKVSDVEKAAQRAAAE
LDEAMDLSKAERDRRKKERAEREAAERAAADAAAAAEAARCTRLFTDGAARGNPGPAGAGAVIVNADGHIVAKIGKFLGD
STNNVAEYMGLILGLKRAKAMGIKELEVLSDSELMVKQLAGDYAVKADHLRPLHDEARALIAGFDRIQVRHVPREENTLA
DAMSNRAIDERL

Specific function: Unknown

COG id: COG0328

COG function: function code L; Ribonuclease HI

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RNase H domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013078
- InterPro:   IPR012337
- InterPro:   IPR014636
- InterPro:   IPR002156 [H]

Pfam domain/function: PF00300 PGAM; PF00075 RnaseH [H]

EC number: NA

Molecular weight: Translated: 27199; Mature: 27068

Theoretical pI: Translated: 8.45; Mature: 8.45

Prosite motif: PS50879 RNASE_H

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKAVLAELLRFIAANEELPRTRARYPGYDRDALGRLLAAAADRVEEAEKAREPAPGAGS
CHHHHHHHHHHHHHCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
KGIKVRKVSDVEKAAQRAAAELDEAMDLSKAERDRRKKERAEREAAERAAADAAAAAEAA
CCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RCTRLFTDGAARGNPGPAGAGAVIVNADGHIVAKIGKFLGDSTNNVAEYMGLILGLKRAK
HHHHHHHCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
AMGIKELEVLSDSELMVKQLAGDYAVKADHLRPLHDEARALIAGFDRIQVRHVPREENTL
HCCHHHHHHHCCHHHHHHHHHCCHHCCHHHCCCHHHHHHHHHHHHHHHHEEECCCHHHHH
ADAMSNRAIDERL
HHHHHHHHHHHCC
>Mature Secondary Structure 
AKAVLAELLRFIAANEELPRTRARYPGYDRDALGRLLAAAADRVEEAEKAREPAPGAGS
HHHHHHHHHHHHHCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
KGIKVRKVSDVEKAAQRAAAELDEAMDLSKAERDRRKKERAEREAAERAAADAAAAAEAA
CCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RCTRLFTDGAARGNPGPAGAGAVIVNADGHIVAKIGKFLGDSTNNVAEYMGLILGLKRAK
HHHHHHHCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
AMGIKELEVLSDSELMVKQLAGDYAVKADHLRPLHDEARALIAGFDRIQVRHVPREENTL
HCCHHHHHHHCCHHHHHHHHHCCHHCCHHHCCCHHHHHHHHHHHHHHHHEEECCCHHHHH
ADAMSNRAIDERL
HHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]