| Definition | Anaeromyxobacter dehalogenans 2CP-1 chromosome, complete genome. |
|---|---|
| Accession | NC_011891 |
| Length | 5,029,329 |
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The map label for this gene is rng [H]
Identifier: 220915849
GI number: 220915849
Start: 825363
End: 827897
Strand: Direct
Name: rng [H]
Synonym: A2cp1_0732
Alternate gene names: 220915849
Gene position: 825363-827897 (Clockwise)
Preceding gene: 220915848
Following gene: 220915850
Centisome position: 16.41
GC content: 72.86
Gene sequence:
>2535_bases ATGGCCGGCAACAGCATCCTCGTGATCAACGCGGCAGGCGCCGAGACGCGCGTCGCGCTGGTCGAGAACGGGACGATCCA CGAGTACTACCTCGAGCGAAAGCGCGAGAAGGGGATCGTCGGGAACATCTACAAGGGCAGGGTGGTCCGCGTGCTCCCCG GCATGCAGGCCGCGTTCGTGGACATCGGCCTGGAGAAGGCGGCGTTCCTGTACGTCGGCGACGTGTACGGGGATCCGGAC TTCTCGGAGGAGTTCGAGCTCACCGAGGGCGAGCACCGCGCCGAGGTGACCGACGTGCCGAGCGAGCAGGAGGCCGAGGA GGCGGAGGCCCGCGCGCGGTCCGCGCCGGCCCCCGAGCCCGGCGCGGCCGCGGCGGCGACTTCCGACGCTTCACCGTCCG TGGAGGCTCCGCCGGCCGTGGCCGCGGAGGCTGCGCACGGCGAGGCCGGGCCGATCGAGGCTGCTCCGACGGAGCCTGCT CCGGTCGCGGAGGCCGCCCCGGCCGAGAGCGCGCTGGCCGAGCCCGCGGCCGCGGAGCCGCCGCCCGCGCCGCTCACGCC CATCGCGCTCACCCAGGAGATCGGCATGGCGCCGGTGCCGGCGATCCCGGGACTCCCGGTGCCGCCGCTCGCCGACGCGC CCGCGGCCGAGCCCGCCGCGGCGGAGAGCTCCGCCGAGCCGTCCGAGCCCGCGTTGCCGTCCGTCGCGGCCGCGCCGGCG GAGGCCGCGCTCGCGACCGAGGCGACCCCGGCGACCGAGGCCGCCCCGGCCGCGCCGGCCCAGCCGGAGAAGGATCGCAT CCAGGCGCCCGCGCGCGACGCCGCGCGCGAGGCCCGCGGGGACCGCGAGCGCGATCGCGGTGACCGCCGGCGCGACGAGC GCGGCCGGCGCGACGGCCGCGAGGGTCGCGATGGGCGCGAGGGCCGCGACGGGCGCGAGCGCAACGGCCGGAACGGCCGC GAGGAGAAGCGCACCAAGGAGCCGAAGAACATCCAGGACCTGCTGAAGGAGGGCCAGGAGGTCATCGTCCAGGTCGCGAA GGATCCCATCGGCACGAAGGGCGCCCGCATCACCAGCCACATCTCGCTGCCGGGCCGGCACCTCGTGTTCATGCCGACGG TGGACCACATCGGCATCTCGCGCCGGATCGAGAAGGACGGCGAGCGCCGCCGGCTGCGCGAGATCGTGGACCGCATGCGC CCCGAGGGCACCGGGTTCATCGTGCGGACCGTCGCCGAGAACGTCGAGGCGGCCAAGCTCGAGGCGGACATCCGCTTCCT CATCCAGGTGTGGAACGAGATCATCCGCACCAAGGACAAGGTCTCGGCGCCCGCGCTGCTGCACGGCGACCTCGATCTCA TCCTGCGCGCCACCCGCGACCTGTTCACCGCCGAGGTGGGCAAGCTCGTCATCGACGATCGCGACGAGTACGAGCGCATC CTGCGCTTCGTGCACGATCAGGCGCCGCACCTCGAGTCGCAGATCGAGTCGTACCAGGGCCAGGAGCCCATCTTCGACGC GTACGGGATCGAGCAGGAGCTGAAGCGCGCGGCCCAGCGCAAGGTGTGGCTCAAGTCCGGCGGCTACATCATCATGGACC AGGCGGAGGCGCTCACCGCCATCGACGTCAACTCGGGCCGCTACGTCGGCAAGAAGAACCTCGAGGAGACGATCACCAAG ATCAACGTCGAGGCCGCCAAGGAGATCGTCTACCAGCTGCGGCTGCGCAACATCGGCGGCATCATCATCATCGACTTCAT CGACATGGACAAACCCCAGAACCGCGACAAGGTCTTCAAGGCCTTGCAGGACGCGCTGGGGCGGGACAAGGCCAAGACCA ACGTCCTCAAGATTTCCGAGCTCGGCCTCGTCGAGATGACGCGCAAGCGCGTGCGCGAGTCGGTGACCCGGGTCATGAAC GAGCCGTGCCCGTACTGCGACGGCCGCGGGCACGTGAAGTCCAAGATCACGATCGCCTACGAGATCTTCCGCGAGATCCG TCGCGAGGCGCCGCACTTCCCCGAGCCGGTGCTGGTGGTGAACTCGCACCCGGAGGTCGCGCGCATCCTGCAGGGCGCGG AGCGCGAGGAGCTCCGTTACCTGATGGATCGCTTCAACAAGACCATCCAGGTGAAGCCGCAGTCCGGCTACCACCAGGAG CAGTTCGACATCTACGGCCGCCAGGAACGCGCCGAGCAGGGCGGCGGTGGCGGTGGTGGAGGCTCCGGCGGGGGCTCCGG CGGTGGCGGTGGCGGCTCCGGAGGAGGCGGCGGCGGCGGACGGGATCGCGACCGCGGCCGAGGCCGCGACCGGCGCGGCG GGCGGGGCGGCGAGCGGGGCGGCGAGCGGAACGACCGCAACGAGCGCGGCGAGCGCGGTGAGCGCGGCGAGCGGAACGAC CGCGGCGGCGAGCGCAGCGACCGAGGCGAGCGCGGCCAGCGCGAGGAGCGCGGCGACCGCGGCGGCGAGCGTCCCGAGGG CGGCGAGCCGCGCGCGGCGCCCGAGGCCCCGGCCCAGGGCGGCGAGAAGGCCTGA
Upstream 100 bases:
>100_bases CAGATCCGACCCTCCCGGCTCCACCGGGACGTTCGCGATCGTGGCCCGCCGGATGGGGCCTCGCTCTCCCCGCGTCTGAA CGGGGCGAGAGAGGACCATC
Downstream 100 bases:
>100_bases GGCGGGGCCGTGCCGGCGCGCCTCGACCAGGGCTCGGGGGTGGCGAAGGTGGAGCGCGAGCTCCGCTTCGCCAGCACCGC GCTCCGGCTGGCGCTGCGCG
Product: ribonuclease, Rne/Rng family
Products: NA
Alternate protein names: RNase G; Cytoplasmic axial filament protein [H]
Number of amino acids: Translated: 844; Mature: 843
Protein sequence:
>844_residues MAGNSILVINAAGAETRVALVENGTIHEYYLERKREKGIVGNIYKGRVVRVLPGMQAAFVDIGLEKAAFLYVGDVYGDPD FSEEFELTEGEHRAEVTDVPSEQEAEEAEARARSAPAPEPGAAAAATSDASPSVEAPPAVAAEAAHGEAGPIEAAPTEPA PVAEAAPAESALAEPAAAEPPPAPLTPIALTQEIGMAPVPAIPGLPVPPLADAPAAEPAAAESSAEPSEPALPSVAAAPA EAALATEATPATEAAPAAPAQPEKDRIQAPARDAAREARGDRERDRGDRRRDERGRRDGREGRDGREGRDGRERNGRNGR EEKRTKEPKNIQDLLKEGQEVIVQVAKDPIGTKGARITSHISLPGRHLVFMPTVDHIGISRRIEKDGERRRLREIVDRMR PEGTGFIVRTVAENVEAAKLEADIRFLIQVWNEIIRTKDKVSAPALLHGDLDLILRATRDLFTAEVGKLVIDDRDEYERI LRFVHDQAPHLESQIESYQGQEPIFDAYGIEQELKRAAQRKVWLKSGGYIIMDQAEALTAIDVNSGRYVGKKNLEETITK INVEAAKEIVYQLRLRNIGGIIIIDFIDMDKPQNRDKVFKALQDALGRDKAKTNVLKISELGLVEMTRKRVRESVTRVMN EPCPYCDGRGHVKSKITIAYEIFREIRREAPHFPEPVLVVNSHPEVARILQGAEREELRYLMDRFNKTIQVKPQSGYHQE QFDIYGRQERAEQGGGGGGGGSGGGSGGGGGGSGGGGGGGRDRDRGRGRDRRGGRGGERGGERNDRNERGERGERGERND RGGERSDRGERGQREERGDRGGERPEGGEPRAAPEAPAQGGEKA
Sequences:
>Translated_844_residues MAGNSILVINAAGAETRVALVENGTIHEYYLERKREKGIVGNIYKGRVVRVLPGMQAAFVDIGLEKAAFLYVGDVYGDPD FSEEFELTEGEHRAEVTDVPSEQEAEEAEARARSAPAPEPGAAAAATSDASPSVEAPPAVAAEAAHGEAGPIEAAPTEPA PVAEAAPAESALAEPAAAEPPPAPLTPIALTQEIGMAPVPAIPGLPVPPLADAPAAEPAAAESSAEPSEPALPSVAAAPA EAALATEATPATEAAPAAPAQPEKDRIQAPARDAAREARGDRERDRGDRRRDERGRRDGREGRDGREGRDGRERNGRNGR EEKRTKEPKNIQDLLKEGQEVIVQVAKDPIGTKGARITSHISLPGRHLVFMPTVDHIGISRRIEKDGERRRLREIVDRMR PEGTGFIVRTVAENVEAAKLEADIRFLIQVWNEIIRTKDKVSAPALLHGDLDLILRATRDLFTAEVGKLVIDDRDEYERI LRFVHDQAPHLESQIESYQGQEPIFDAYGIEQELKRAAQRKVWLKSGGYIIMDQAEALTAIDVNSGRYVGKKNLEETITK INVEAAKEIVYQLRLRNIGGIIIIDFIDMDKPQNRDKVFKALQDALGRDKAKTNVLKISELGLVEMTRKRVRESVTRVMN EPCPYCDGRGHVKSKITIAYEIFREIRREAPHFPEPVLVVNSHPEVARILQGAEREELRYLMDRFNKTIQVKPQSGYHQE QFDIYGRQERAEQGGGGGGGGSGGGSGGGGGGSGGGGGGGRDRDRGRGRDRRGGRGGERGGERNDRNERGERGERGERND RGGERSDRGERGQREERGDRGGERPEGGEPRAAPEAPAQGGEKA >Mature_843_residues AGNSILVINAAGAETRVALVENGTIHEYYLERKREKGIVGNIYKGRVVRVLPGMQAAFVDIGLEKAAFLYVGDVYGDPDF SEEFELTEGEHRAEVTDVPSEQEAEEAEARARSAPAPEPGAAAAATSDASPSVEAPPAVAAEAAHGEAGPIEAAPTEPAP VAEAAPAESALAEPAAAEPPPAPLTPIALTQEIGMAPVPAIPGLPVPPLADAPAAEPAAAESSAEPSEPALPSVAAAPAE AALATEATPATEAAPAAPAQPEKDRIQAPARDAAREARGDRERDRGDRRRDERGRRDGREGRDGREGRDGRERNGRNGRE EKRTKEPKNIQDLLKEGQEVIVQVAKDPIGTKGARITSHISLPGRHLVFMPTVDHIGISRRIEKDGERRRLREIVDRMRP EGTGFIVRTVAENVEAAKLEADIRFLIQVWNEIIRTKDKVSAPALLHGDLDLILRATRDLFTAEVGKLVIDDRDEYERIL RFVHDQAPHLESQIESYQGQEPIFDAYGIEQELKRAAQRKVWLKSGGYIIMDQAEALTAIDVNSGRYVGKKNLEETITKI NVEAAKEIVYQLRLRNIGGIIIIDFIDMDKPQNRDKVFKALQDALGRDKAKTNVLKISELGLVEMTRKRVRESVTRVMNE PCPYCDGRGHVKSKITIAYEIFREIRREAPHFPEPVLVVNSHPEVARILQGAEREELRYLMDRFNKTIQVKPQSGYHQEQ FDIYGRQERAEQGGGGGGGGSGGGSGGGGGGSGGGGGGGRDRDRGRGRDRRGGRGGERGGERNDRNERGERGERGERNDR GGERSDRGERGQREERGDRGGERPEGGEPRAAPEAPAQGGEKA
Specific function: Involved in the processing of the 5'-end of 16S rRNA. Could be involved in chromosome segregation and cell division. It may be one of the components of the cytoplasmic axial filaments bundles or merely regulate the formation of this structure [H]
COG id: COG1530
COG function: function code J; Ribonucleases G and E
Gene ontology:
Cell location: Cytoplasm, cytoskeleton [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 S1 motif domain [H]
Homologues:
Organism=Escherichia coli, GI87082235, Length=404, Percent_Identity=45.5445544554455, Blast_Score=345, Evalue=8e-96, Organism=Escherichia coli, GI1787325, Length=346, Percent_Identity=41.907514450867, Blast_Score=253, Evalue=4e-68,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012340 - InterPro: IPR016027 - InterPro: IPR003029 - InterPro: IPR019307 - InterPro: IPR022967 - InterPro: IPR004659 [H]
Pfam domain/function: PF10150 RNase_E_G; PF00575 S1 [H]
EC number: 3.1.4.- [C]
Molecular weight: Translated: 91556; Mature: 91425
Theoretical pI: Translated: 5.35; Mature: 5.35
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAGNSILVINAAGAETRVALVENGTIHEYYLERKREKGIVGNIYKGRVVRVLPGMQAAFV CCCCCEEEEECCCCCEEEEEEECCCHHHHHHHHHHHCCCCCCCCCCCEEEECCCCHHHHH DIGLEKAAFLYVGDVYGDPDFSEEFELTEGEHRAEVTDVPSEQEAEEAEARARSAPAPEP HHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHCCCCCHHHHHHHHHHHHCCCCCCC GAAAAATSDASPSVEAPPAVAAEAAHGEAGPIEAAPTEPAPVAEAAPAESALAEPAAAEP CCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCC PPAPLTPIALTQEIGMAPVPAIPGLPVPPLADAPAAEPAAAESSAEPSEPALPSVAAAPA CCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCH EAALATEATPATEAAPAAPAQPEKDRIQAPARDAAREARGDRERDRGDRRRDERGRRDGR HHHHHCCCCCCCCCCCCCCCCCCHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCC EGRDGREGRDGRERNGRNGREEKRTKEPKNIQDLLKEGQEVIVQVAKDPIGTKGARITSH CCCCCCCCCCCHHCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEE ISLPGRHLVFMPTVDHIGISRRIEKDGERRRLREIVDRMRPEGTGFIVRTVAENVEAAKL ECCCCCEEEEECCHHHHCHHHHHHCCHHHHHHHHHHHHHCCCCCCEEHHHHHHCHHHHHH EADIRFLIQVWNEIIRTKDKVSAPALLHGDLDLILRATRDLFTAEVGKLVIDDRDEYERI HHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHEECCCHHHHHH LRFVHDQAPHLESQIESYQGQEPIFDAYGIEQELKRAAQRKVWLKSGGYIIMDQAEALTA HHHHHHCCCHHHHHHHHHCCCCCCHHHCCCHHHHHHHHHHHEEEECCCEEEEECCCEEEE IDVNSGRYVGKKNLEETITKINVEAAKEIVYQLRLRNIGGIIIIDFIDMDKPQNRDKVFK EECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHH ALQDALGRDKAKTNVLKISELGLVEMTRKRVRESVTRVMNEPCPYCDGRGHVKSKITIAY HHHHHHCCCHHHHCEEEHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH EIFREIRREAPHFPEPVLVVNSHPEVARILQGAEREELRYLMDRFNKTIQVKPQSGYHQE HHHHHHHHHCCCCCCCEEEECCCHHHHHHHCCCCHHHHHHHHHHCCCEEEECCCCCCCHH QFDIYGRQERAEQGGGGGGGGSGGGSGGGGGGSGGGGGGGRDRDRGRGRDRRGGRGGERG HHHHCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC GERNDRNERGERGERGERNDRGGERSDRGERGQREERGDRGGERPEGGEPRAAPEAPAQG CCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCC GEKA CCCC >Mature Secondary Structure AGNSILVINAAGAETRVALVENGTIHEYYLERKREKGIVGNIYKGRVVRVLPGMQAAFV CCCCEEEEECCCCCEEEEEEECCCHHHHHHHHHHHCCCCCCCCCCCEEEECCCCHHHHH DIGLEKAAFLYVGDVYGDPDFSEEFELTEGEHRAEVTDVPSEQEAEEAEARARSAPAPEP HHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHCCCCCHHHHHHHHHHHHCCCCCCC GAAAAATSDASPSVEAPPAVAAEAAHGEAGPIEAAPTEPAPVAEAAPAESALAEPAAAEP CCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCC PPAPLTPIALTQEIGMAPVPAIPGLPVPPLADAPAAEPAAAESSAEPSEPALPSVAAAPA CCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCH EAALATEATPATEAAPAAPAQPEKDRIQAPARDAAREARGDRERDRGDRRRDERGRRDGR HHHHHCCCCCCCCCCCCCCCCCCHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCC EGRDGREGRDGRERNGRNGREEKRTKEPKNIQDLLKEGQEVIVQVAKDPIGTKGARITSH CCCCCCCCCCCHHCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEE ISLPGRHLVFMPTVDHIGISRRIEKDGERRRLREIVDRMRPEGTGFIVRTVAENVEAAKL ECCCCCEEEEECCHHHHCHHHHHHCCHHHHHHHHHHHHHCCCCCCEEHHHHHHCHHHHHH EADIRFLIQVWNEIIRTKDKVSAPALLHGDLDLILRATRDLFTAEVGKLVIDDRDEYERI HHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHEECCCHHHHHH LRFVHDQAPHLESQIESYQGQEPIFDAYGIEQELKRAAQRKVWLKSGGYIIMDQAEALTA HHHHHHCCCHHHHHHHHHCCCCCCHHHCCCHHHHHHHHHHHEEEECCCEEEEECCCEEEE IDVNSGRYVGKKNLEETITKINVEAAKEIVYQLRLRNIGGIIIIDFIDMDKPQNRDKVFK EECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHH ALQDALGRDKAKTNVLKISELGLVEMTRKRVRESVTRVMNEPCPYCDGRGHVKSKITIAY HHHHHHCCCHHHHCEEEHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH EIFREIRREAPHFPEPVLVVNSHPEVARILQGAEREELRYLMDRFNKTIQVKPQSGYHQE HHHHHHHHHCCCCCCCEEEECCCHHHHHHHCCCCHHHHHHHHHHCCCEEEECCCCCCCHH QFDIYGRQERAEQGGGGGGGGSGGGSGGGGGGSGGGGGGGRDRDRGRGRDRRGGRGGERG HHHHCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC GERNDRNERGERGERGERNDRGGERSDRGERGQREERGDRGGERPEGGEPRAAPEAPAQG CCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCC GEKA CCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]