Click here to switch to the map view.

The map label for this gene is chrC [H]

Identifier: 220914848

GI number: 220914848

Start: 215495

End: 216112

Strand: Reverse

Name: chrC [H]

Synonym: Mnod_7990

Alternate gene names: 220914848

Gene position: 216112-215495 (Counterclockwise)

Preceding gene: 220914849

Following gene: 220914847

Centisome position: 47.18

GC content: 60.84

Gene sequence:

>618_bases
ATGACGTACGCCATAAAGCCGCTCGGCTGCGATCCAGCTCGGATCAAAGGCATGTCGGAACGGCTGATCGTCAGCCATTA
CGAGAACAACTACGGCGGTGCCGTGAAACGGCTGAATCTCATCGAGGAGCAGCTTGCCGGGCTGGATTACGAGACGACGC
CCGGCTTCGTGATCAATGGGCTCAAGCGCGAGCAATTGATCGCGATGAATTCGATGATCCTGCATGAGCTGTTTTTCGGC
GGCCTTGGCCAGGAGAGCGAGCCGGGACCGGTCCTACGCAAAGCGCTTGCCCGCAGCTTTGGTTCATTCGAGCGCTGGCG
CTCCGAGTTCATCGCCATGGGCAAAGCTCTGGCCGGCGGTTCCGGATGGGTGCTCCTGTCCTGGTCGCCCCGAGACGGCC
AGCTGGTCAACCAGTGGGCCGCCGACCACGCGCACACGCTGGCGGGGGGCGTGCCGATCCTGGCGCTCGACATGTACGAG
CATTCCTACCAGATCGATTACGGCTCCAAGGCCGCGACTTACGTCGACACCTTCATGCAGGCGATCCGCTGGGAGAACGC
GGACCGGCTATTTTTCAGTTTAAGGGAAGGTGAACGTACCACAATGACTCCGGGTTGA

Upstream 100 bases:

>100_bases
AAGGGTCGGCTCGGCCGCCCTTGCCCTCGCAAGCAGGCACATGACGAGAGGACTGGTTGCCCTCGGCGATCACGCCTGCG
CTCGGTCAGAGGAGGTCAGG

Downstream 100 bases:

>100_bases
TTCCGCAATCTCCAAAAGGGGGCTGACCTATGTTGCCGAAGCCTTTTGGATCCGCTCTCGTTCGCACAGCGGCAGGACTC
CTGCTTGCCGTGCAGCTAGC

Product: manganese and iron superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 205; Mature: 204

Protein sequence:

>205_residues
MTYAIKPLGCDPARIKGMSERLIVSHYENNYGGAVKRLNLIEEQLAGLDYETTPGFVINGLKREQLIAMNSMILHELFFG
GLGQESEPGPVLRKALARSFGSFERWRSEFIAMGKALAGGSGWVLLSWSPRDGQLVNQWAADHAHTLAGGVPILALDMYE
HSYQIDYGSKAATYVDTFMQAIRWENADRLFFSLREGERTTMTPG

Sequences:

>Translated_205_residues
MTYAIKPLGCDPARIKGMSERLIVSHYENNYGGAVKRLNLIEEQLAGLDYETTPGFVINGLKREQLIAMNSMILHELFFG
GLGQESEPGPVLRKALARSFGSFERWRSEFIAMGKALAGGSGWVLLSWSPRDGQLVNQWAADHAHTLAGGVPILALDMYE
HSYQIDYGSKAATYVDTFMQAIRWENADRLFFSLREGERTTMTPG
>Mature_204_residues
TYAIKPLGCDPARIKGMSERLIVSHYENNYGGAVKRLNLIEEQLAGLDYETTPGFVINGLKREQLIAMNSMILHELFFGG
LGQESEPGPVLRKALARSFGSFERWRSEFIAMGKALAGGSGWVLLSWSPRDGQLVNQWAADHAHTLAGGVPILALDMYEH
SYQIDYGSKAATYVDTFMQAIRWENADRLFFSLREGERTTMTPG

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Caenorhabditis elegans, GI17506561, Length=179, Percent_Identity=26.2569832402235, Blast_Score=64, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI17569479, Length=182, Percent_Identity=25.2747252747253, Blast_Score=64, Evalue=8e-11,

Paralogues:

None

Copy number: 2980 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 22850; Mature: 22719

Theoretical pI: Translated: 6.36; Mature: 6.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTYAIKPLGCDPARIKGMSERLIVSHYENNYGGAVKRLNLIEEQLAGLDYETTPGFVING
CCEECCCCCCCHHHHCCCCHHHEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEC
LKREQLIAMNSMILHELFFGGLGQESEPGPVLRKALARSFGSFERWRSEFIAMGKALAGG
CCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCC
SGWVLLSWSPRDGQLVNQWAADHAHTLAGGVPILALDMYEHSYQIDYGSKAATYVDTFMQ
CCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCEEEECCCCHHHHHHHHHHH
AIRWENADRLFFSLREGERTTMTPG
HHHCCCCCCEEEEECCCCEECCCCC
>Mature Secondary Structure 
TYAIKPLGCDPARIKGMSERLIVSHYENNYGGAVKRLNLIEEQLAGLDYETTPGFVING
CEECCCCCCCHHHHCCCCHHHEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEC
LKREQLIAMNSMILHELFFGGLGQESEPGPVLRKALARSFGSFERWRSEFIAMGKALAGG
CCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCC
SGWVLLSWSPRDGQLVNQWAADHAHTLAGGVPILALDMYEHSYQIDYGSKAATYVDTFMQ
CCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCEEEECCCCHHHHHHHHHHH
AIRWENADRLFFSLREGERTTMTPG
HHHCCCCCCEEEEECCCCEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471500; 2180932 [H]