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The map label for this gene is yeaM [H]

Identifier: 220914747

GI number: 220914747

Start: 95156

End: 95977

Strand: Reverse

Name: yeaM [H]

Synonym: Mnod_7861

Alternate gene names: 220914747

Gene position: 95977-95156 (Counterclockwise)

Preceding gene: 220914748

Following gene: 220914746

Centisome position: 20.95

GC content: 61.07

Gene sequence:

>822_bases
ATGATCTGGCAGACGATCGCCGCGCCACTTAGTGTACCTTCCCCAAGGCCGATGACGGTCCGTGCCCAGTCCATCCCAGC
GCGACACTACTTCTCGAAGCATGTTCACCGTTGGAATCAAGTCGTCTACGCGATCGTCGGCGCGCTGACGGTCGCCACGG
AGGGGCGCTCCTTCGTGATATCACCAGAGCAGGCTGTCTGGCTGCCGACTGGCCTGCCGCACCGCGTCGGGTCGCTACTC
GGTGCGGAGTTCCGCAATCTGTGGATCGCCGATGAGACCGGCGTGGGCCTTCCGAAGAGCCCGACCGTCTTCAACGTCTT
GCCACTGCTACAAGCCCTGATTATTGAGGCTGCGGAGATCGATGGACAGGAAGACCAAGATGGCTACGCGGGCCGCATTG
CCGGTCTAATCCTCGATCAACTTCAGCGCGCGCGGCCTCTTCCTGCCGCCCTGTCCTGGCCTCGCAGAGGACCCTTGGCA
AGAATATGCGAGGCCGTATACGCCGACCCTCGCGATCCACGCGGGCCCGAGGAACGGGGAAAAGAACTCGGCATGTCGGG
GCGAACCCTGGCCCGCCACTTCCAAGCGGAACTGGGTATCAGTTTGCGCTCTTGGCGGCGTCTCCTACGACTTTTCAAAG
CGATCGAATTGCTGGGTGGCGGCTTAGACGTGACACGCACGGCAATTGAACTCGATTACGACTCAACATCAGCATTTATC
TACGCGTTCCGTGCCGAAATGGGATGTAGCCCACAAGCCTACGTGCGCGGACATGCGGCGCATCGCCGTTTTCCAACCTG
CTGCGGAAACGCACCAGCGTAG

Upstream 100 bases:

>100_bases
CCTAGTTATATGATCAGCCCGTCTGCACTCCTGCCGTTTTGTGCTGCCGTGCTCGTCCTCCAGGCTCTGTGTAGAGCATC
GGACAAATACGAGAGCGATC

Downstream 100 bases:

>100_bases
GGAAGAAGCTCACCAGACTTCAACTCGGTCGAGAAGATTTTTCGCCAAGCTTCAGGATTTAGTTCGAAAGGCTGCAGCCA
GCGCATCGTCCGACCAAGCT

Product: transcriptional regulator, AraC family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 273; Mature: 273

Protein sequence:

>273_residues
MIWQTIAAPLSVPSPRPMTVRAQSIPARHYFSKHVHRWNQVVYAIVGALTVATEGRSFVISPEQAVWLPTGLPHRVGSLL
GAEFRNLWIADETGVGLPKSPTVFNVLPLLQALIIEAAEIDGQEDQDGYAGRIAGLILDQLQRARPLPAALSWPRRGPLA
RICEAVYADPRDPRGPEERGKELGMSGRTLARHFQAELGISLRSWRRLLRLFKAIELLGGGLDVTRTAIELDYDSTSAFI
YAFRAEMGCSPQAYVRGHAAHRRFPTCCGNAPA

Sequences:

>Translated_273_residues
MIWQTIAAPLSVPSPRPMTVRAQSIPARHYFSKHVHRWNQVVYAIVGALTVATEGRSFVISPEQAVWLPTGLPHRVGSLL
GAEFRNLWIADETGVGLPKSPTVFNVLPLLQALIIEAAEIDGQEDQDGYAGRIAGLILDQLQRARPLPAALSWPRRGPLA
RICEAVYADPRDPRGPEERGKELGMSGRTLARHFQAELGISLRSWRRLLRLFKAIELLGGGLDVTRTAIELDYDSTSAFI
YAFRAEMGCSPQAYVRGHAAHRRFPTCCGNAPA
>Mature_273_residues
MIWQTIAAPLSVPSPRPMTVRAQSIPARHYFSKHVHRWNQVVYAIVGALTVATEGRSFVISPEQAVWLPTGLPHRVGSLL
GAEFRNLWIADETGVGLPKSPTVFNVLPLLQALIIEAAEIDGQEDQDGYAGRIAGLILDQLQRARPLPAALSWPRRGPLA
RICEAVYADPRDPRGPEERGKELGMSGRTLARHFQAELGISLRSWRRLLRLFKAIELLGGGLDVTRTAIELDYDSTSAFI
YAFRAEMGCSPQAYVRGHAAHRRFPTCCGNAPA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788091, Length=222, Percent_Identity=28.8288288288288, Blast_Score=97, Evalue=1e-21,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding [H]

EC number: NA

Molecular weight: Translated: 30078; Mature: 30078

Theoretical pI: Translated: 9.47; Mature: 9.47

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIWQTIAAPLSVPSPRPMTVRAQSIPARHYFSKHVHRWNQVVYAIVGALTVATEGRSFVI
CCCHHHCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEECCCEEEE
SPEQAVWLPTGLPHRVGSLLGAEFRNLWIADETGVGLPKSPTVFNVLPLLQALIIEAAEI
CCCCEEEECCCCHHHHHHHHHHHHHHEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHC
DGQEDQDGYAGRIAGLILDQLQRARPLPAALSWPRRGPLARICEAVYADPRDPRGPEERG
CCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCHHHHHHHHHCCCCCCCCHHHHH
KELGMSGRTLARHFQAELGISLRSWRRLLRLFKAIELLGGGLDVTRTAIELDYDSTSAFI
HHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHEEEEECCCCCCCEE
YAFRAEMGCSPQAYVRGHAAHRRFPTCCGNAPA
EEEEHHCCCCCHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MIWQTIAAPLSVPSPRPMTVRAQSIPARHYFSKHVHRWNQVVYAIVGALTVATEGRSFVI
CCCHHHCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEECCCEEEE
SPEQAVWLPTGLPHRVGSLLGAEFRNLWIADETGVGLPKSPTVFNVLPLLQALIIEAAEI
CCCCEEEECCCCHHHHHHHHHHHHHHEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHC
DGQEDQDGYAGRIAGLILDQLQRARPLPAALSWPRRGPLARICEAVYADPRDPRGPEERG
CCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCHHHHHHHHHCCCCCCCCHHHHH
KELGMSGRTLARHFQAELGISLRSWRRLLRLFKAIELLGGGLDVTRTAIELDYDSTSAFI
HHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHEEEEECCCCCCCEE
YAFRAEMGCSPQAYVRGHAAHRRFPTCCGNAPA
EEEEHHCCCCCHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]