| Definition | Methylobacterium nodulans ORS 2060 plasmid pMNOD02, complete sequence. |
|---|---|
| Accession | NC_011887 |
| Length | 458,070 |
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The map label for this gene is 220914698
Identifier: 220914698
GI number: 220914698
Start: 36821
End: 37606
Strand: Reverse
Name: 220914698
Synonym: Mnod_7806
Alternate gene names: NA
Gene position: 37606-36821 (Counterclockwise)
Preceding gene: 220914699
Following gene: 220914697
Centisome position: 8.21
GC content: 62.98
Gene sequence:
>786_bases ATGCGTTTCGCACTGAATCATATTCTTGCGCCGAAGCTCCCGCTCGAGGAATTCTTCGCTTCTGCCCGCGCGCTCGGCGC GACGGAGGTCGAGATCCGCAACGACCTGCCTGATGTCGTCGGTACCGTTGCGCCCGAAGAGGTAAGGACCGCCGCCGAAA AGACAGGTGTGTCGATCATTTCGATCAAAGCGCTCTATCCGTTCAACGTCTGGACGGACGATATGGCGAAGCGCGCCGCC AAGCTCGCTGCCTATGCGGCGGCCTGCGGCGCGAAGGCTCTGGTGATGTGCCCGCTCAATGAGGGCAAGGCCGTCGCGTT CGACGTCCTCGTCGCCTCGCTCAAGGCGATGAAGCCCATCCTTCTGGACCACCGCCTGACCGGCCTTGTCGAGCCGCTCG GCTTCCCGGTTTCCTCTCTTCGCACCAAGAAGGAGGCGATTGCAGCGATCAGGGCGGCCGATGGGGCGGACACCTACAGG CTGGTGCACGACACGTTCCACCATCATCTCGCCGGCGAGACGGAATTCTTTCCCGAGTGGACGGGGCTCGTGCACATCTC CGGCGTGACCGACCCCATCGTTGCGGTCGCCGACATGCTCGATGCGCATCGCGTCCTCGTCGACGGCGCCGACCGTCTGG AGAACATCCCCCAGATCAGAAGGCTGATCGCGGCGGGCTATTCGGGTCCCTTCAGCTTCGAACCCTTCGCGACCGAGGTT CATGAGCTTGAGGATCCCAAAGGCGCAGCGAAGCGGAGCATGGACTTCGTGTCCGCTTCTCTCTGA
Upstream 100 bases:
>100_bases GATCACCTCGGATGCATGCGTCGAGGCGCAGGAGCGAGCAGGCGAGGCCGTCGCCATCACCCTGCCCGCCCGTCCTTCGC TCTACAACTGAGGTGATGTC
Downstream 100 bases:
>100_bases AAGCAGCGCTCCGGGACCAACAAAAAGAAGGCGTCGGCCCATGCCTGGGCCGGCAGCTGGTCTGACGAAATGGAACTGGC CATGAAGCGACTTTTGCTTG
Product: Xylose isomerase domain protein TIM barrel
Products: NA
Alternate protein names: Xylose Isomerase Domain Protein TIM Barrel; IolI Protein; Cytoplasmic Protein; Myo-Inositol Catabolism Protein; Sugar Epimerase; Sugar Epimerase Protein; Xylose Isomerase-Like TIM Barrel; Protein IolI; Protein Implicated IN Myo-Inositol Catabolique Pathway; Protein Implicated In Myo-Inositol Catabolique Pathway; IolL Protein; Myo-Inositol Catabolism Protein IolI
Number of amino acids: Translated: 261; Mature: 261
Protein sequence:
>261_residues MRFALNHILAPKLPLEEFFASARALGATEVEIRNDLPDVVGTVAPEEVRTAAEKTGVSIISIKALYPFNVWTDDMAKRAA KLAAYAAACGAKALVMCPLNEGKAVAFDVLVASLKAMKPILLDHRLTGLVEPLGFPVSSLRTKKEAIAAIRAADGADTYR LVHDTFHHHLAGETEFFPEWTGLVHISGVTDPIVAVADMLDAHRVLVDGADRLENIPQIRRLIAAGYSGPFSFEPFATEV HELEDPKGAAKRSMDFVSASL
Sequences:
>Translated_261_residues MRFALNHILAPKLPLEEFFASARALGATEVEIRNDLPDVVGTVAPEEVRTAAEKTGVSIISIKALYPFNVWTDDMAKRAA KLAAYAAACGAKALVMCPLNEGKAVAFDVLVASLKAMKPILLDHRLTGLVEPLGFPVSSLRTKKEAIAAIRAADGADTYR LVHDTFHHHLAGETEFFPEWTGLVHISGVTDPIVAVADMLDAHRVLVDGADRLENIPQIRRLIAAGYSGPFSFEPFATEV HELEDPKGAAKRSMDFVSASL >Mature_261_residues MRFALNHILAPKLPLEEFFASARALGATEVEIRNDLPDVVGTVAPEEVRTAAEKTGVSIISIKALYPFNVWTDDMAKRAA KLAAYAAACGAKALVMCPLNEGKAVAFDVLVASLKAMKPILLDHRLTGLVEPLGFPVSSLRTKKEAIAAIRAADGADTYR LVHDTFHHHLAGETEFFPEWTGLVHISGVTDPIVAVADMLDAHRVLVDGADRLENIPQIRRLIAAGYSGPFSFEPFATEV HELEDPKGAAKRSMDFVSASL
Specific function: Unknown
COG id: COG4130
COG function: function code G; Predicted sugar epimerase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28195; Mature: 28195
Theoretical pI: Translated: 6.04; Mature: 6.04
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRFALNHILAPKLPLEEFFASARALGATEVEIRNDLPDVVGTVAPEEVRTAAEKTGVSII CCCCHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHCCHHHHHCCCHHHHHHHHHHCCCEEE SIKALYPFNVWTDDMAKRAAKLAAYAAACGAKALVMCPLNEGKAVAFDVLVASLKAMKPI EEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHH LLDHRLTGLVEPLGFPVSSLRTKKEAIAAIRAADGADTYRLVHDTFHHHLAGETEFFPEW HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCC TGLVHISGVTDPIVAVADMLDAHRVLVDGADRLENIPQIRRLIAAGYSGPFSFEPFATEV CCEEEECCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH HELEDPKGAAKRSMDFVSASL HHHCCCCHHHHHHHHHHHHCC >Mature Secondary Structure MRFALNHILAPKLPLEEFFASARALGATEVEIRNDLPDVVGTVAPEEVRTAAEKTGVSII CCCCHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHCCHHHHHCCCHHHHHHHHHHCCCEEE SIKALYPFNVWTDDMAKRAAKLAAYAAACGAKALVMCPLNEGKAVAFDVLVASLKAMKPI EEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHH LLDHRLTGLVEPLGFPVSSLRTKKEAIAAIRAADGADTYRLVHDTFHHHLAGETEFFPEW HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCC TGLVHISGVTDPIVAVADMLDAHRVLVDGADRLENIPQIRRLIAAGYSGPFSFEPFATEV CCEEEECCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH HELEDPKGAAKRSMDFVSASL HHHCCCCHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA