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The map label for this gene is rraA [C]

Identifier: 220905640

GI number: 220905640

Start: 2869429

End: 2870106

Strand: Direct

Name: rraA [C]

Synonym: Ddes_2380

Alternate gene names: 220905640

Gene position: 2869429-2870106 (Clockwise)

Preceding gene: 220905639

Following gene: 220905642

Centisome position: 99.86

GC content: 61.8

Gene sequence:

>678_bases
ATGCGCTACGCCATCAACAGCAGTTTTTCCCGGCCACATCCTTCCATCATTGCCCAGTACAGGGATCTGCCCGTGGCCGA
CATCTGCGATGCCCTGGGCCGCAATGCCGCCCTGCCAGCGGCCCTGCGTCCTCTGGGTGCGGCCCGTATGCTGGGCACGG
CCTATACCGTCAACCTGCCGGCCAGCCAGAACCTGCTGCTCTATTACGCTGTGGACAATGCCCGGCCGGGCGATGTGTTG
GTTGTTTCATGCGCGGCGTACGAAGATCGTGCCGTATGCGGCGAAATCATGGCCCATCTGGCGCTCAGGCGCGGCCTGGC
GGGCTTTGTCATCGATGGGGCCGTACGCGATGCCCGCGCCCTGAGCGAACTGTCCTTTCCGGTCTACGCCCGCGCCGTAA
CTCCCAACGGGCCGTACAAAGACGCCTGCGGCGAAGTAAATGTTCCTGTAGGTATGGGCAATGTGGTCATAACCCCCGGA
GACATCATCGTGGCTGACGACGACGGCCTCGTGGCCGTGCGGGCCGCAGAAGCGGAAACCGTGGCCGCCCGGGCGAAGAA
AATCACAGATGAAGGGATGAAAAAACTCCGCCGGATTGAAGAAAACGGCACTCTGGATTTTTCCTGGCTGTATGAAAAGC
TCGACAGATCCGGTTGCGCTATTCGCGGCGGCCGCTGA

Upstream 100 bases:

>100_bases
ACGCCAGTTAAACGCATCAGACACTGCCGTATTTTTTCCATGCCTGGTGTCACTGCCCAGAAAACCACGTGCTGATAACC
GCGTCTGAAAAGGACAAAAA

Downstream 100 bases:

>100_bases
TCTTACAGCGCCTCGCAGGGTACAGGCCCTCGAACACGCCTGCCCGCCAAGAGTGCTTCGCACCCCTCCGGAGACCGTGA
AGTCACCTGTGCCGCTGCCA

Product: Dimethylmenaquinone methyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 225; Mature: 225

Protein sequence:

>225_residues
MRYAINSSFSRPHPSIIAQYRDLPVADICDALGRNAALPAALRPLGAARMLGTAYTVNLPASQNLLLYYAVDNARPGDVL
VVSCAAYEDRAVCGEIMAHLALRRGLAGFVIDGAVRDARALSELSFPVYARAVTPNGPYKDACGEVNVPVGMGNVVITPG
DIIVADDDGLVAVRAAEAETVAARAKKITDEGMKKLRRIEENGTLDFSWLYEKLDRSGCAIRGGR

Sequences:

>Translated_225_residues
MRYAINSSFSRPHPSIIAQYRDLPVADICDALGRNAALPAALRPLGAARMLGTAYTVNLPASQNLLLYYAVDNARPGDVL
VVSCAAYEDRAVCGEIMAHLALRRGLAGFVIDGAVRDARALSELSFPVYARAVTPNGPYKDACGEVNVPVGMGNVVITPG
DIIVADDDGLVAVRAAEAETVAARAKKITDEGMKKLRRIEENGTLDFSWLYEKLDRSGCAIRGGR
>Mature_225_residues
MRYAINSSFSRPHPSIIAQYRDLPVADICDALGRNAALPAALRPLGAARMLGTAYTVNLPASQNLLLYYAVDNARPGDVL
VVSCAAYEDRAVCGEIMAHLALRRGLAGFVIDGAVRDARALSELSFPVYARAVTPNGPYKDACGEVNVPVGMGNVVITPG
DIIVADDDGLVAVRAAEAETVAARAKKITDEGMKKLRRIEENGTLDFSWLYEKLDRSGCAIRGGR

Specific function: Regulator Of Rnase E/Rne, Which Inhibits The Endonuclease Activity And Thereby Leads To Increase The Half-Life And Abundance Of Rnas. General Modulator Of RNA Abundance. Does Not Have Any Methyltransferase Activity. [C]

COG id: COG0684

COG function: function code H; Demethylmenaquinone methyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RraA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005493 [H]

Pfam domain/function: PF03737 Methyltransf_6 [H]

EC number: NA

Molecular weight: Translated: 24049; Mature: 24049

Theoretical pI: Translated: 7.24; Mature: 7.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRYAINSSFSRPHPSIIAQYRDLPVADICDALGRNAALPAALRPLGAARMLGTAYTVNLP
CCEECCCCCCCCCHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHCCHHHHHHCEEEEEECC
ASQNLLLYYAVDNARPGDVLVVSCAAYEDRAVCGEIMAHLALRRGLAGFVIDGAVRDARA
CCCCEEEEEEECCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHH
LSELSFPVYARAVTPNGPYKDACGEVNVPVGMGNVVITPGDIIVADDDGLVAVRAAEAET
HHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCEEEECCCCEEEEEECCHHH
VAARAKKITDEGMKKLRRIEENGTLDFSWLYEKLDRSGCAIRGGR
HHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHCCCCCEEECCC
>Mature Secondary Structure
MRYAINSSFSRPHPSIIAQYRDLPVADICDALGRNAALPAALRPLGAARMLGTAYTVNLP
CCEECCCCCCCCCHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHCCHHHHHHCEEEEEECC
ASQNLLLYYAVDNARPGDVLVVSCAAYEDRAVCGEIMAHLALRRGLAGFVIDGAVRDARA
CCCCEEEEEEECCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHH
LSELSFPVYARAVTPNGPYKDACGEVNVPVGMGNVVITPGDIIVADDDGLVAVRAAEAET
HHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCEEEECCCCEEEEEECCHHH
VAARAKKITDEGMKKLRRIEENGTLDFSWLYEKLDRSGCAIRGGR
HHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHCCCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]