Definition Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 chromosome, complete genome.
Accession NC_011883
Length 2,873,437

Click here to switch to the map view.

The map label for this gene is 220905639

Identifier: 220905639

GI number: 220905639

Start: 2868033

End: 2869313

Strand: Direct

Name: 220905639

Synonym: Ddes_2379

Alternate gene names: NA

Gene position: 2868033-2869313 (Clockwise)

Preceding gene: 220905638

Following gene: 220905640

Centisome position: 99.81

GC content: 55.19

Gene sequence:

>1281_bases
ATGCCGGATGGCAGCGGCGGGATGCTCATGCTTTATACCATAAAATATGGCGAGGGCAGTTTACGTGTCGCACTGCCGGA
CACGCTTTCCGTTGATGTCTTCACCCCGCGGCAGGCTCCTCCTCTTGCCGATCCGCTTGCCGTCTTTGCCGGAGCACTGG
ACAAACCGGAAGGCTGCCCCCGCCTGGAGGAAATGGCCGTGCCGGAATCCATCGCCATTGCACTTCCCGACGAAACACGG
CCTTTCCCCATAAAACTGTTGCTGCCTGTATTGTTGAAAAAAATATTCAATGTTTTTCCACAGATTGATCATGGCAATAT
ACGTATTGTTGTTGGCGGCGGCCTGCATGAGCCACCAGATGCGGCCCAGTTGCGGCGCATTTTACCGTCGGAGTTGCACG
GATACGCCGTTGTAAGCCACGATGCCAAAAATTCGCCCGTACGGCGTATGGGCGTTACCAGCCGTGGGACACCTGTGGAA
ATCAATGCGGCCTATGCGGATGCCGATCTTAAAATCGTCATGGGTATGGTGGACGCACATCAGTTTGCCGGGTTCACGGG
AGGTGCAAAGGGCGTTGTTGTGGGTTGTGCCTCAGCGGCGATGATCGCCAAAAACCACAGCATGCTGCAGGCTTCCGGCG
CGCATGCAGGCAATATTGAGGGCAATCCCGTGCGGGAAGACCTCAATGAGGCTGGAGAAATCGCGGGCGTAACACTGGCC
GTCAACGTTGCCCTGACCCCGGAAAAACAGATTGCCGCTCTTTTTGTGGGCAATCCGCCCCGGATAATGCGTTCCGCAGC
CCTGGCCACCCGGCGTCTTTACGGCCTCAGACTGGAATCCGCCTATGACATTGTCATTGCTTCCTGCGGTGGAGCGCCCA
AGGACATTTGCCTGTATCAGGCACAAAAGGCTCTGGACCCGGCACGGCGCATAGTTGCACCTGCCGGTAAAATTCTGCTG
GCGGCGGAATGTTCTCAGGGTATCGGTGATGACAGATACGAAAACTACGTGAGCTGCTTTGCAAACCACGAAACCCTGTT
ACGCGACTTTGCCCGGCAGGAATTCAAAATGGGCGCACACAAGGCTTTTCTGTTTTCCCGTGTTGCGGCCTCACATGAGC
TTGTGCTGCATACCGCCCTTTCAGATACAGATGTCGCTCGCTGCCTGCTGCAAAAGGGAGACGCGCAGGCCACGCTGGAC
AGATGGGTTGAAAAGAATCCGGCTGCAAAGGTAGCAATTCTTACTCACGCCAACTCCATGTTTTTTTATGAAGAAGAATA
A

Upstream 100 bases:

>100_bases
GGGCAAGCTTTGTAAAACTGCTCAATGTTCCTACCCCTACCGGGCTGTTTTTTTAGATGTTTTTCAAAAATAACACTATA
CTGCACATCTGCCATCCGGC

Downstream 100 bases:

>100_bases
GCTGCCAGCTATATGACGCCAGTTAAACGCATCAGACACTGCCGTATTTTTTCCATGCCTGGTGTCACTGCCCAGAAAAC
CACGTGCTGATAACCGCGTC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 426; Mature: 425

Protein sequence:

>426_residues
MPDGSGGMLMLYTIKYGEGSLRVALPDTLSVDVFTPRQAPPLADPLAVFAGALDKPEGCPRLEEMAVPESIAIALPDETR
PFPIKLLLPVLLKKIFNVFPQIDHGNIRIVVGGGLHEPPDAAQLRRILPSELHGYAVVSHDAKNSPVRRMGVTSRGTPVE
INAAYADADLKIVMGMVDAHQFAGFTGGAKGVVVGCASAAMIAKNHSMLQASGAHAGNIEGNPVREDLNEAGEIAGVTLA
VNVALTPEKQIAALFVGNPPRIMRSAALATRRLYGLRLESAYDIVIASCGGAPKDICLYQAQKALDPARRIVAPAGKILL
AAECSQGIGDDRYENYVSCFANHETLLRDFARQEFKMGAHKAFLFSRVAASHELVLHTALSDTDVARCLLQKGDAQATLD
RWVEKNPAAKVAILTHANSMFFYEEE

Sequences:

>Translated_426_residues
MPDGSGGMLMLYTIKYGEGSLRVALPDTLSVDVFTPRQAPPLADPLAVFAGALDKPEGCPRLEEMAVPESIAIALPDETR
PFPIKLLLPVLLKKIFNVFPQIDHGNIRIVVGGGLHEPPDAAQLRRILPSELHGYAVVSHDAKNSPVRRMGVTSRGTPVE
INAAYADADLKIVMGMVDAHQFAGFTGGAKGVVVGCASAAMIAKNHSMLQASGAHAGNIEGNPVREDLNEAGEIAGVTLA
VNVALTPEKQIAALFVGNPPRIMRSAALATRRLYGLRLESAYDIVIASCGGAPKDICLYQAQKALDPARRIVAPAGKILL
AAECSQGIGDDRYENYVSCFANHETLLRDFARQEFKMGAHKAFLFSRVAASHELVLHTALSDTDVARCLLQKGDAQATLD
RWVEKNPAAKVAILTHANSMFFYEEE
>Mature_425_residues
PDGSGGMLMLYTIKYGEGSLRVALPDTLSVDVFTPRQAPPLADPLAVFAGALDKPEGCPRLEEMAVPESIAIALPDETRP
FPIKLLLPVLLKKIFNVFPQIDHGNIRIVVGGGLHEPPDAAQLRRILPSELHGYAVVSHDAKNSPVRRMGVTSRGTPVEI
NAAYADADLKIVMGMVDAHQFAGFTGGAKGVVVGCASAAMIAKNHSMLQASGAHAGNIEGNPVREDLNEAGEIAGVTLAV
NVALTPEKQIAALFVGNPPRIMRSAALATRRLYGLRLESAYDIVIASCGGAPKDICLYQAQKALDPARRIVAPAGKILLA
AECSQGIGDDRYENYVSCFANHETLLRDFARQEFKMGAHKAFLFSRVAASHELVLHTALSDTDVARCLLQKGDAQATLDR
WVEKNPAAKVAILTHANSMFFYEEE

Specific function: Unknown

COG id: COG3875

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 45648; Mature: 45517

Theoretical pI: Translated: 6.65; Mature: 6.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDGSGGMLMLYTIKYGEGSLRVALPDTLSVDVFTPRQAPPLADPLAVFAGALDKPEGCP
CCCCCCCEEEEEEEEECCCEEEEECCCCEEEEEECCCCCCCCCCHHHHHHCCCCCCCCCC
RLEEMAVPESIAIALPDETRPFPIKLLLPVLLKKIFNVFPQIDHGNIRIVVGGGLHEPPD
CHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCC
AAQLRRILPSELHGYAVVSHDAKNSPVRRMGVTSRGTPVEINAAYADADLKIVMGMVDAH
HHHHHHHHHHHCCCEEEEECCCCCCCHHHCCCCCCCCCEEEEEEECCCCEEEEEEHHHHH
QFAGFTGGAKGVVVGCASAAMIAKNHSMLQASGAHAGNIEGNPVREDLNEAGEIAGVTLA
HHCCCCCCCCEEEEEECHHHHHHCCCCCEEECCCCCCCCCCCCHHHHHHHHHCEEEEEEE
VNVALTPEKQIAALFVGNPPRIMRSAALATRRLYGLRLESAYDIVIASCGGAPKDICLYQ
EEEEECCCCCEEEEEECCCHHHHHHHHHHHHHHHCEEECCCEEEEEEECCCCCHHHHHHH
AQKALDPARRIVAPAGKILLAAECSQGIGDDRYENYVSCFANHETLLRDFARQEFKMGAH
HHHHHCHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHCCHH
KAFLFSRVAASHELVLHTALSDTDVARCLLQKGDAQATLDRWVEKNPAAKVAILTHANSM
HHHHHHHHHCCCEEEEEEECCCHHHHHHHHHCCCCHHHHHHHHHCCCCCEEEEEEECCEE
FFYEEE
EEEECC
>Mature Secondary Structure 
PDGSGGMLMLYTIKYGEGSLRVALPDTLSVDVFTPRQAPPLADPLAVFAGALDKPEGCP
CCCCCCEEEEEEEEECCCEEEEECCCCEEEEEECCCCCCCCCCHHHHHHCCCCCCCCCC
RLEEMAVPESIAIALPDETRPFPIKLLLPVLLKKIFNVFPQIDHGNIRIVVGGGLHEPPD
CHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCC
AAQLRRILPSELHGYAVVSHDAKNSPVRRMGVTSRGTPVEINAAYADADLKIVMGMVDAH
HHHHHHHHHHHCCCEEEEECCCCCCCHHHCCCCCCCCCEEEEEEECCCCEEEEEEHHHHH
QFAGFTGGAKGVVVGCASAAMIAKNHSMLQASGAHAGNIEGNPVREDLNEAGEIAGVTLA
HHCCCCCCCCEEEEEECHHHHHHCCCCCEEECCCCCCCCCCCCHHHHHHHHHCEEEEEEE
VNVALTPEKQIAALFVGNPPRIMRSAALATRRLYGLRLESAYDIVIASCGGAPKDICLYQ
EEEEECCCCCEEEEEECCCHHHHHHHHHHHHHHHCEEECCCEEEEEEECCCCCHHHHHHH
AQKALDPARRIVAPAGKILLAAECSQGIGDDRYENYVSCFANHETLLRDFARQEFKMGAH
HHHHHCHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHCCHH
KAFLFSRVAASHELVLHTALSDTDVARCLLQKGDAQATLDRWVEKNPAAKVAILTHANSM
HHHHHHHHHCCCEEEEEEECCCHHHHHHHHHCCCCHHHHHHHHHCCCCCEEEEEEECCEE
FFYEEE
EEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA