Click here to switch to the map view.

The map label for this gene is recR [H]

Identifier: 220905409

GI number: 220905409

Start: 2587904

End: 2588512

Strand: Direct

Name: recR [H]

Synonym: Ddes_2147

Alternate gene names: 220905409

Gene position: 2587904-2588512 (Clockwise)

Preceding gene: 220905408

Following gene: 220905410

Centisome position: 90.06

GC content: 64.37

Gene sequence:

>609_bases
ATGAACAAACGTATTCCCGAACCACTCAAGGCCCTGGTGGAGCAGCTCGCGCGCCTGCCGGGCCTTGGCCCCAAATCCGC
CATGCGCGCGGCCATGGCCCTGCTCAAATGGCCGGAGGCCGAAACCCGCCGCCTGGGGCGCGGCATCCATGACCTGCGCG
ACAACCTGCACCTGTGCTCGCGCTGCGGCGGACTTGCGTCCACAGACCCCTGCCCGGTCTGTGCCGATGCCGAACGCGCG
CGCGACACGCTCTGCCTGGTCACCGAGTGGGACAGCATGCTTACCCTGGACGAAGGCGGCTTTTACCGGGGGCAGTACAT
GATCCTCGGCGGTCTGCTGGCCCCCCTGGAACGGATGGACGCTGAAGGTCTCGATACAGACCGGCTGGTGCGCCGGCTGG
ATGAGGGAGAGGTGACCGAGCTTATCCTGGCTCTCGGGGCTACGCTGGAAGCGGAAAATACTGCTACGTTCATCCGCCGT
CTGGTGGCCGGGCGTTTTCCGCATGTGCGCATTTCGCGGCTGGCGCAAGGCATTCCCCTGGGCGCAGAAGTCAAATATAT
GGACAAAGAAACCCTGCGACAGTCGCTTCAGTACCGGCAGGACCTCTAA

Upstream 100 bases:

>100_bases
GCTGCCGTCAATGAGGCGGGGCGTATCGCCCGTGAAACCATGGACCGCGAAATGAGCAACATTTCCGGCGGCATCAAGCT
GCCCGGCCTCTTCTAGGTTC

Downstream 100 bases:

>100_bases
AGCAGATCAACGTTGCGAATGCACATTCGCAACGTCACGGCGCTTGCGCCTGCACGCGAACGCCCGCTCGCATAGCCGCC
AGGGCAATCTTTCTTTGAAA

Product: recombination protein RecR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 202; Mature: 202

Protein sequence:

>202_residues
MNKRIPEPLKALVEQLARLPGLGPKSAMRAAMALLKWPEAETRRLGRGIHDLRDNLHLCSRCGGLASTDPCPVCADAERA
RDTLCLVTEWDSMLTLDEGGFYRGQYMILGGLLAPLERMDAEGLDTDRLVRRLDEGEVTELILALGATLEAENTATFIRR
LVAGRFPHVRISRLAQGIPLGAEVKYMDKETLRQSLQYRQDL

Sequences:

>Translated_202_residues
MNKRIPEPLKALVEQLARLPGLGPKSAMRAAMALLKWPEAETRRLGRGIHDLRDNLHLCSRCGGLASTDPCPVCADAERA
RDTLCLVTEWDSMLTLDEGGFYRGQYMILGGLLAPLERMDAEGLDTDRLVRRLDEGEVTELILALGATLEAENTATFIRR
LVAGRFPHVRISRLAQGIPLGAEVKYMDKETLRQSLQYRQDL
>Mature_202_residues
MNKRIPEPLKALVEQLARLPGLGPKSAMRAAMALLKWPEAETRRLGRGIHDLRDNLHLCSRCGGLASTDPCPVCADAERA
RDTLCLVTEWDSMLTLDEGGFYRGQYMILGGLLAPLERMDAEGLDTDRLVRRLDEGEVTELILALGATLEAENTATFIRR
LVAGRFPHVRISRLAQGIPLGAEVKYMDKETLRQSLQYRQDL

Specific function: May play a role in DNA repair. It seems to be involved in an recBC-independent recombinational process of DNA repair. It may act with recF and recO [H]

COG id: COG0353

COG function: function code L; Recombinational DNA repair protein (RecF pathway)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recR family [H]

Homologues:

Organism=Escherichia coli, GI1786678, Length=195, Percent_Identity=33.8461538461538, Blast_Score=113, Evalue=8e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003583
- InterPro:   IPR000093
- InterPro:   IPR006171
- InterPro:   IPR015967 [H]

Pfam domain/function: PF02132 RecR [H]

EC number: NA

Molecular weight: Translated: 22525; Mature: 22525

Theoretical pI: Translated: 6.77; Mature: 6.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKRIPEPLKALVEQLARLPGLGPKSAMRAAMALLKWPEAETRRLGRGIHDLRDNLHLCS
CCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHH
RCGGLASTDPCPVCADAERARDTLCLVTEWDSMLTLDEGGFYRGQYMILGGLLAPLERMD
HCCCCCCCCCCCCCCCHHHHHCCEEEEECCCCEEEECCCCCCCCHHHHHHHHHHHHHHHC
AEGLDTDRLVRRLDEGEVTELILALGATLEAENTATFIRRLVAGRFPHVRISRLAQGIPL
CCCCCHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHCCCCC
GAEVKYMDKETLRQSLQYRQDL
CCCCHHCCHHHHHHHHHHHHCC
>Mature Secondary Structure
MNKRIPEPLKALVEQLARLPGLGPKSAMRAAMALLKWPEAETRRLGRGIHDLRDNLHLCS
CCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHH
RCGGLASTDPCPVCADAERARDTLCLVTEWDSMLTLDEGGFYRGQYMILGGLLAPLERMD
HCCCCCCCCCCCCCCCHHHHHCCEEEEECCCCEEEECCCCCCCCHHHHHHHHHHHHHHHC
AEGLDTDRLVRRLDEGEVTELILALGATLEAENTATFIRRLVAGRFPHVRISRLAQGIPL
CCCCCHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHCCCCC
GAEVKYMDKETLRQSLQYRQDL
CCCCHHCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA