| Definition | Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 chromosome, complete genome. |
|---|---|
| Accession | NC_011883 |
| Length | 2,873,437 |
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The map label for this gene is tgt [H]
Identifier: 220905288
GI number: 220905288
Start: 2438030
End: 2439253
Strand: Direct
Name: tgt [H]
Synonym: Ddes_2026
Alternate gene names: 220905288
Gene position: 2438030-2439253 (Clockwise)
Preceding gene: 220905274
Following gene: 220905289
Centisome position: 84.85
GC content: 61.36
Gene sequence:
>1224_bases ATGTCCGGCGGGCGTCATGCATTGCAGGCCGGGCACACGCAGGACTGCTTGCATCCCGGCCCGCTTGCATATACTGTGCG CGGCATGTCCGATACCATTTTTACCATAGAGCATACCGACGGGGCCGCCCGCGCAGGAATCCTGCGCACGGCACACGGCA CGATTCCCACACCTATCTTCATGCCCGTGGGCACAGTAGGCTCGGTCAAGGCCATTGCTCCTGACGACCTGGCCGCCATC GGCGCGCCCGTGATACTCGGCAATACCTACCATCTGTACCTGCGCCCCGGCGACGAACTGGTGGCCCGGCGCGGCGGCCT GCACAAGTTCGCCTCCTGGCCCGGCTCCATTCTTACCGACAGCGGCGGTTTTCAGGTCTTCAGCCTCAGCTCGCTGCGCA AAATCCGTGAAGAAGGGGTGGAGTTCCGCTCGCACCTTGACGGTTCCCGTCATCTGTTCACGCCTGAAAAGGTGTTGCAG ATACAGCGCAACCTCAACTCCGACATCATGATGGTGCTTGATGAGTGCGTGCCGTATGGCGCGGACTATGACTATACCGA AAAATCACTGGCTCTCACCACACGGTGGGCACTGCGCGCCCGGGCGGCCTACCCGGCAGGCACGGCGCACAACCTGCTTT TTGCCATCACTCAGGGCGGCTTTCATAAAGACCTGCGCACGCGCTCGGTGGAAGAGCTGTGCGGCCTTGACTTTGACGGC TTTGCCATCGGCGGCCTTTCGGTGGGCGAACCCAAAGACCAGATGTATGACCTGCTCTATCACACCGCCCCCCAGCTGCC CGGCAACAAACCCCGCTATCTTATGGGCGTGGGTACGCCGCTTGATATCGCCAACGGCATCAACGCCGGGGTGGACATGT TCGACTGCGTGCTGCCCACCCGCAACGCGCGCAACGGCACGCTCTATACCTCACAGGGAAAAATAAACATCAGGCGCAGG CAGTTTGCCGAAGACGACGGCCCCCTGGACCCCAACTGCCGCTGCTACACCTGCCGCAACTTTTCGCGCGCCTACCTGCG CCATCTGTATGCCAGCCAGGAGCTGCTTTCTTTTCGCCTCAACTCGCTGCACAATCTCACGTACTTTCTCGATCTGGCCC GCAATGCGCGCCAGGCCATCATTGAAGGCCGATACGCCGCCTTTCTTGCAGGCATTGAGGCTCTCTATCCCGATGAGGCG GCAAGAGCCGCTGCCGGAGCATAG
Upstream 100 bases:
>100_bases CCCCTTTTTCGTGTCTGGAAGCGCAAGACAGAACAGATAGCTCTACCGATAATAGATTCATTTATTCCGGCATACGATCT TTGTCAAACATCCATCCGGC
Downstream 100 bases:
>100_bases AGCAGTTTCAAAGTGAAAATGCTTTGGCGTATGCTCGCGCAGACGTCCGCCGTGGAGGCACAGGCACAATGTAGTTACGC TGTTACGCGCAGAGCGAACG
Product: queuine tRNA-ribosyltransferase
Products: NA
Alternate protein names: Guanine insertion enzyme; tRNA-guanine transglycosylase [H]
Number of amino acids: Translated: 407; Mature: 406
Protein sequence:
>407_residues MSGGRHALQAGHTQDCLHPGPLAYTVRGMSDTIFTIEHTDGAARAGILRTAHGTIPTPIFMPVGTVGSVKAIAPDDLAAI GAPVILGNTYHLYLRPGDELVARRGGLHKFASWPGSILTDSGGFQVFSLSSLRKIREEGVEFRSHLDGSRHLFTPEKVLQ IQRNLNSDIMMVLDECVPYGADYDYTEKSLALTTRWALRARAAYPAGTAHNLLFAITQGGFHKDLRTRSVEELCGLDFDG FAIGGLSVGEPKDQMYDLLYHTAPQLPGNKPRYLMGVGTPLDIANGINAGVDMFDCVLPTRNARNGTLYTSQGKINIRRR QFAEDDGPLDPNCRCYTCRNFSRAYLRHLYASQELLSFRLNSLHNLTYFLDLARNARQAIIEGRYAAFLAGIEALYPDEA ARAAAGA
Sequences:
>Translated_407_residues MSGGRHALQAGHTQDCLHPGPLAYTVRGMSDTIFTIEHTDGAARAGILRTAHGTIPTPIFMPVGTVGSVKAIAPDDLAAI GAPVILGNTYHLYLRPGDELVARRGGLHKFASWPGSILTDSGGFQVFSLSSLRKIREEGVEFRSHLDGSRHLFTPEKVLQ IQRNLNSDIMMVLDECVPYGADYDYTEKSLALTTRWALRARAAYPAGTAHNLLFAITQGGFHKDLRTRSVEELCGLDFDG FAIGGLSVGEPKDQMYDLLYHTAPQLPGNKPRYLMGVGTPLDIANGINAGVDMFDCVLPTRNARNGTLYTSQGKINIRRR QFAEDDGPLDPNCRCYTCRNFSRAYLRHLYASQELLSFRLNSLHNLTYFLDLARNARQAIIEGRYAAFLAGIEALYPDEA ARAAAGA >Mature_406_residues SGGRHALQAGHTQDCLHPGPLAYTVRGMSDTIFTIEHTDGAARAGILRTAHGTIPTPIFMPVGTVGSVKAIAPDDLAAIG APVILGNTYHLYLRPGDELVARRGGLHKFASWPGSILTDSGGFQVFSLSSLRKIREEGVEFRSHLDGSRHLFTPEKVLQI QRNLNSDIMMVLDECVPYGADYDYTEKSLALTTRWALRARAAYPAGTAHNLLFAITQGGFHKDLRTRSVEELCGLDFDGF AIGGLSVGEPKDQMYDLLYHTAPQLPGNKPRYLMGVGTPLDIANGINAGVDMFDCVLPTRNARNGTLYTSQGKINIRRRQ FAEDDGPLDPNCRCYTCRNFSRAYLRHLYASQELLSFRLNSLHNLTYFLDLARNARQAIIEGRYAAFLAGIEALYPDEAA RAAAGA
Specific function: Exchanges the guanine residue with 7-aminomethyl-7- deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). After this exchange, a cyclopentendiol moiety is attached to the 7-aminomethyl group of 7-deazaguanine, resulting in the hyper
COG id: COG0343
COG function: function code J; Queuine/archaeosine tRNA-ribosyltransferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the queuine tRNA-ribosyltransferase family [H]
Homologues:
Organism=Homo sapiens, GI13654276, Length=363, Percent_Identity=45.4545454545455, Blast_Score=318, Evalue=8e-87, Organism=Escherichia coli, GI1786607, Length=357, Percent_Identity=52.1008403361345, Blast_Score=406, Evalue=1e-114, Organism=Caenorhabditis elegans, GI17544680, Length=350, Percent_Identity=41.7142857142857, Blast_Score=272, Evalue=2e-73, Organism=Caenorhabditis elegans, GI25146502, Length=182, Percent_Identity=28.5714285714286, Blast_Score=71, Evalue=1e-12, Organism=Drosophila melanogaster, GI19920510, Length=377, Percent_Identity=42.9708222811671, Blast_Score=302, Evalue=2e-82, Organism=Drosophila melanogaster, GI21355311, Length=192, Percent_Identity=29.1666666666667, Blast_Score=82, Evalue=7e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004803 - InterPro: IPR002616 [H]
Pfam domain/function: PF01702 TGT [H]
EC number: =2.4.2.29 [H]
Molecular weight: Translated: 44588; Mature: 44457
Theoretical pI: Translated: 7.63; Mature: 7.63
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSGGRHALQAGHTQDCLHPGPLAYTVRGMSDTIFTIEHTDGAARAGILRTAHGTIPTPIF CCCCCCHHHCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCHHHCEEEECCCCCCCCCE MPVGTVGSVKAIAPDDLAAIGAPVILGNTYHLYLRPGDELVARRGGLHKFASWPGSILTD EECCCCCCEEEECCCHHHHHCCCEEECCEEEEEECCCHHHHHHCCCCHHHHCCCCCEEEC SGGFQVFSLSSLRKIREEGVEFRSHLDGSRHLFTPEKVLQIQRNLNSDIMMVLDECVPYG CCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCC ADYDYTEKSLALTTRWALRARAAYPAGTAHNLLFAITQGGFHKDLRTRSVEELCGLDFDG CCCCCCCCCEEEEHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCC FAIGGLSVGEPKDQMYDLLYHTAPQLPGNKPRYLMGVGTPLDIANGINAGVDMFDCVLPT EEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEECCCCHHHHCCCCCCCHHHHHHCCC RNARNGTLYTSQGKINIRRRQFAEDDGPLDPNCRCYTCRNFSRAYLRHLYASQELLSFRL CCCCCCEEEECCCCEEEHHHHCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHH NSLHNLTYFLDLARNARQAIIEGRYAAFLAGIEALYPDEAARAAAGA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCC >Mature Secondary Structure SGGRHALQAGHTQDCLHPGPLAYTVRGMSDTIFTIEHTDGAARAGILRTAHGTIPTPIF CCCCCHHHCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCHHHCEEEECCCCCCCCCE MPVGTVGSVKAIAPDDLAAIGAPVILGNTYHLYLRPGDELVARRGGLHKFASWPGSILTD EECCCCCCEEEECCCHHHHHCCCEEECCEEEEEECCCHHHHHHCCCCHHHHCCCCCEEEC SGGFQVFSLSSLRKIREEGVEFRSHLDGSRHLFTPEKVLQIQRNLNSDIMMVLDECVPYG CCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCC ADYDYTEKSLALTTRWALRARAAYPAGTAHNLLFAITQGGFHKDLRTRSVEELCGLDFDG CCCCCCCCCEEEEHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCC FAIGGLSVGEPKDQMYDLLYHTAPQLPGNKPRYLMGVGTPLDIANGINAGVDMFDCVLPT EEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEECCCCHHHHCCCCCCCHHHHHHCCC RNARNGTLYTSQGKINIRRRQFAEDDGPLDPNCRCYTCRNFSRAYLRHLYASQELLSFRL CCCCCCEEEECCCCEEEHHHHCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHH NSLHNLTYFLDLARNARQAIIEGRYAAFLAGIEALYPDEAARAAAGA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA