Click here to switch to the map view.

The map label for this gene is sufC [H]

Identifier: 220905184

GI number: 220905184

Start: 2315618

End: 2316412

Strand: Direct

Name: sufC [H]

Synonym: Ddes_1922

Alternate gene names: 220905184

Gene position: 2315618-2316412 (Clockwise)

Preceding gene: 220905183

Following gene: 220905185

Centisome position: 80.59

GC content: 58.36

Gene sequence:

>795_bases
ATGCTTGAAATCCGTAACCTGCATGTGGAGGTCAAGGGTACTCCCGTACTTAAAGGTATTGACCTGCACGTCAAGCCCGG
CGAAACATTCATACTCTTCGGCCCCAACGGTTCCGGCAAAACAACCCTGCTCATGACCCTCATGGGCGTTTCGGGATATA
CCGTCACCCAGGGGCAGATCATCTTCAAAGGCAACGATATCACCCATGCGCCCATGTATGAGCGGGCGCGCCTTGGCATA
GGCATGTCTTTTCAGCGGCCGCCCACCATTCACGGCCTGCCCACGGGCAAGCTGGTGGAACTGTGCGGGCGCGGGCGACC
GATGGACGTGGAAGACATGGCCCGCAAGGTACACTTTGACCAGTTTTTGAACCGCGACGTCAACGCAGGCTTTTCCGGCG
GCGAGATAAAGCGCTCAGAACTGCTGCAGCTCATGGCCCAGCAGCCCGACCTTCTGCTTTTTGACGAACCGGAATCCGGC
GTGGACCTTGAAAATATGGCGCTTGTGGGAAAAACCGTGCGCAGCCTGCTGGACGGCCTGCCCGACCGATGTTGCGCCAC
CCTGCGGCAACGCGAAAAAGCGCGCTCCACCAGCGGCCTGATCATCACCCATACGGGGCATATTCTTGAATATGTCAATG
CCCACCGGGGGCAGGTCATGTATAACGGCAAACTCTGCTGCGAGGCCGGGCCGCGCGAAATTCTCGACCATATCGCCAAT
CACGGTTATCAGGAATGCCTGCGCTGCCTGGCCGGCGACATGTTTGGCAAAATTGCGGAGGCCCCCCTCAAATGA

Upstream 100 bases:

>100_bases
GGCAGGGCCGTGGGGGACGAGTGCGTCTCCAGGCTGACCCATATTCTGGACCATGTACATTACGATGTGATGGAATATCT
TGGTGAAACCGGAGACAATA

Downstream 100 bases:

>100_bases
GCACAGTCAATCTCTCCCGGTACAGCTTCAACGGCAACGAAGGTGCCGCCCCCATAGAAAACCTCGCCAGCCTGCCCGCC
GCGGACAAGGAACGCCTTGT

Product: ABC transporter-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 264; Mature: 264

Protein sequence:

>264_residues
MLEIRNLHVEVKGTPVLKGIDLHVKPGETFILFGPNGSGKTTLLMTLMGVSGYTVTQGQIIFKGNDITHAPMYERARLGI
GMSFQRPPTIHGLPTGKLVELCGRGRPMDVEDMARKVHFDQFLNRDVNAGFSGGEIKRSELLQLMAQQPDLLLFDEPESG
VDLENMALVGKTVRSLLDGLPDRCCATLRQREKARSTSGLIITHTGHILEYVNAHRGQVMYNGKLCCEAGPREILDHIAN
HGYQECLRCLAGDMFGKIAEAPLK

Sequences:

>Translated_264_residues
MLEIRNLHVEVKGTPVLKGIDLHVKPGETFILFGPNGSGKTTLLMTLMGVSGYTVTQGQIIFKGNDITHAPMYERARLGI
GMSFQRPPTIHGLPTGKLVELCGRGRPMDVEDMARKVHFDQFLNRDVNAGFSGGEIKRSELLQLMAQQPDLLLFDEPESG
VDLENMALVGKTVRSLLDGLPDRCCATLRQREKARSTSGLIITHTGHILEYVNAHRGQVMYNGKLCCEAGPREILDHIAN
HGYQECLRCLAGDMFGKIAEAPLK
>Mature_264_residues
MLEIRNLHVEVKGTPVLKGIDLHVKPGETFILFGPNGSGKTTLLMTLMGVSGYTVTQGQIIFKGNDITHAPMYERARLGI
GMSFQRPPTIHGLPTGKLVELCGRGRPMDVEDMARKVHFDQFLNRDVNAGFSGGEIKRSELLQLMAQQPDLLLFDEPESG
VDLENMALVGKTVRSLLDGLPDRCCATLRQREKARSTSGLIITHTGHILEYVNAHRGQVMYNGKLCCEAGPREILDHIAN
HGYQECLRCLAGDMFGKIAEAPLK

Specific function: Has low ATPase activity. The SufBCD complex acts synergistically with SufE to stimulate the cysteine desulfurase activity of SufS. The SufBCD complex contributes to the assembly or repair of oxygen-labile iron-sulfur clusters under oxidative stress. May f

COG id: COG0396

COG function: function code O; ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Escherichia coli, GI1787972, Length=258, Percent_Identity=34.8837209302326, Blast_Score=142, Evalue=2e-35,
Organism=Escherichia coli, GI87081791, Length=249, Percent_Identity=29.3172690763052, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI87081709, Length=221, Percent_Identity=28.0542986425339, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1789672, Length=249, Percent_Identity=27.3092369477912, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1787029, Length=259, Percent_Identity=26.6409266409266, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1789593, Length=244, Percent_Identity=27.8688524590164, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1788761, Length=224, Percent_Identity=28.125, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1787370, Length=237, Percent_Identity=27.0042194092827, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788165, Length=240, Percent_Identity=25.4166666666667, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI87081834, Length=225, Percent_Identity=26.2222222222222, Blast_Score=62, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI212646699, Length=224, Percent_Identity=27.6785714285714, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI71996809, Length=225, Percent_Identity=28.8888888888889, Blast_Score=65, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI193211015, Length=225, Percent_Identity=28.8888888888889, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI193211017, Length=225, Percent_Identity=28.8888888888889, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17558664, Length=223, Percent_Identity=25.1121076233184, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24659289, Length=234, Percent_Identity=28.2051282051282, Blast_Score=65, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593
- InterPro:   IPR010230 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 29091; Mature: 29091

Theoretical pI: Translated: 7.55; Mature: 7.55

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
6.8 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
6.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLEIRNLHVEVKGTPVLKGIDLHVKPGETFILFGPNGSGKTTLLMTLMGVSGYTVTQGQI
CCEEEEEEEEEECCEEEECEEEEECCCCEEEEECCCCCCCCEEEEEECCCCCEEEECCEE
IFKGNDITHAPMYERARLGIGMSFQRPPTIHGLPTGKLVELCGRGRPMDVEDMARKVHFD
EEECCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHH
QFLNRDVNAGFSGGEIKRSELLQLMAQQPDLLLFDEPESGVDLENMALVGKTVRSLLDGL
HHHCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCC
PDRCCATLRQREKARSTSGLIITHTGHILEYVNAHRGQVMYNGKLCCEAGPREILDHIAN
CHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHCCCCEEEECCEEEECCCHHHHHHHHHC
HGYQECLRCLAGDMFGKIAEAPLK
CCHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MLEIRNLHVEVKGTPVLKGIDLHVKPGETFILFGPNGSGKTTLLMTLMGVSGYTVTQGQI
CCEEEEEEEEEECCEEEECEEEEECCCCEEEEECCCCCCCCEEEEEECCCCCEEEECCEE
IFKGNDITHAPMYERARLGIGMSFQRPPTIHGLPTGKLVELCGRGRPMDVEDMARKVHFD
EEECCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHH
QFLNRDVNAGFSGGEIKRSELLQLMAQQPDLLLFDEPESGVDLENMALVGKTVRSLLDGL
HHHCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCC
PDRCCATLRQREKARSTSGLIITHTGHILEYVNAHRGQVMYNGKLCCEAGPREILDHIAN
CHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHCCCCEEEECCEEEECCCHHHHHHHHHC
HGYQECLRCLAGDMFGKIAEAPLK
CCHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 10322040 [H]