| Definition | Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 chromosome, complete genome. |
|---|---|
| Accession | NC_011883 |
| Length | 2,873,437 |
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The map label for this gene is 220905097
Identifier: 220905097
GI number: 220905097
Start: 2212765
End: 2214744
Strand: Reverse
Name: 220905097
Synonym: Ddes_1834
Alternate gene names: NA
Gene position: 2214744-2212765 (Counterclockwise)
Preceding gene: 220905098
Following gene: 220905096
Centisome position: 77.08
GC content: 68.48
Gene sequence:
>1980_bases ATGTCTGATCAGAGCAAAAAGGATTCCCGGCCTCCCCGTCCGCAGCAGGACGAAAAAACGCGCGGCAGAGGCGACAGGCC GTCCCGTCCCGGAAAACCCGCAGGAGCCGGGGCGGATAAGGCGGAGCGGCGCAGACCGGGCAAGGACAAAACCGGCGGCC GCAGCGATCAGGGCAGCCACGGCGATACGGCGGGCAATGGCCGCTCCCGGGGCGGCAGACCTGCCGGTCCGGAGATGGGC GGTACGTCCCGCGGTGCCGGAGCGGACAAAAAACGCGCCGAAAGACCGGCTCCCGGCGGCAAACCCGGCGAGGCCGGGCG TGACGGGCGTGGTCGGCCGGGCCACAAAGGGCCGGATGATAATCGTTCTGGCGGCAGGGGGGCGGCCAGGCCTTCCGGCA AGAGCAGGCAGGAGCACACGCCCGGACGTGGCCTGCGTGATGCCCGCGAAATTCGTGCCCCGCGTCGCGACGGCGCATAC GGAACCGCATGGCAGGGAGCCGAGGCCCTGTTTCCGCCTTTGATGGAAGAAGCGCGTCATATCCTTGAGCAACTGCCGCA GGCCCTGTCGCGCGTGTGGCCTTTGAGCAAGGCGCACCGCCGGACCCTGCCTGACGACGTGGCCCGTCTTTCACGCCTGC TTACCACCGAGCGCGCCGCGCTGGACCGTCCGTACTGGAGTTCTCCGGCATTCGTCAGCGCTTATCTGTATTATTTTCTG CCCTGGAATCTCGTGCGGCTCACCCGGCTGCTGTCGGCCATGCCGCTGCCCGACCCGCATCTTGCCGCGCCGCAGGGCGG CAAGGCGCTGCTGCTGGACGTGGGTTCAGGCCCGTTGACGCTGCCCCTGGCCTTGTGGCTGGCCCGGCCCCAATGGCGTC AGGCCCCCATTCAGGTGCTGGCGCTGGACAATTCGTCGCAGCCGCTGGATCTGGGCCGCGCCCTGCTTGAAGAGCTGGCC GGACTTACCTTTCATGAGCCGTGGGCCGTGCAGGTGGCCCGGGGCCAGATGGAGCATGCTGCCCGGCATGCCGCACCCCT GCTTGCCGGGGGGGGGACTCGGCCCTGGCTGGTCAGTGCGGCCAATGTGCTTAATGAGCTGCGCTTCGGCAAGCGCAGCG GGCGGGGAAGTTCCCTTGAAGAGCGGCTCGGCCTGCTGGACGACGACGCGCCGGATGACTTCGGCAGTGCCGACGATATG GAAGATATGGGCGATGACGGACTTTCAGGGGGCAGCCACATGCTGCGGCCTGGCCGTGCACGCGGGCGCGAGGCTGCTGA TGGCGAGCGGCCTGAAGACTGCCGCCAGGAAAAACTGGTGCGCTTTCTGGACTCTCTGGCACCCCTGTTCCACAGCCGTT ACGCGGCCCCGCAAGGCCCGGCCCTGCTTTTTGTGGAGCCGGGTACGCGCCTCGGCGGCTCCACCATCATGGATCTGCGG CAGCTTGCTGTGGAAGGCGGGCTTACGGCGCTGGCCCCTTGCCCTCATCAGGCAGCCTGCCCGCTGTCCGGCGGTCAGGG CGGGCGTACCTGGTGTCACTTCACTTTTGGCAGCGAAGGTGCGCCGCGCTGGCTTGAAGGGCTTTCTGCGGATTCCGGTC TTGCCAAGAGCGGCCTGAGCCTGGCGCCCCTGCTGCTTGCACCCGTACCCCCGGCAGAAGCCGCCCGCATGGCTCCTGAA GGGCCGCACGGACATGGCCGGCCGCCGCGCTCGGGCGTCATGAAAGCCCGTGTGCTCACGGCCCCCTTCGCGGTCCCCGG TCTGGCGGGGCGGGGACGCTACGCCTGTTCAGCCTGCGGCCTTTTGCTGCTGGAAGATGCCGACGGGCTGCCCTCCGGGC ATATGCTTGACGTGAACGTGCCCCCGGATGCGGCGCGCGATGCCAAAAGCGGCGCACGCATTGTGCGGCGGCCCGGCACC TCTTCTTCGGTGCAAGCTCCCCGGCGTGGGCAGGGGCGTAATGAAAGAGGTGGCAGATAG
Upstream 100 bases:
>100_bases GGAACTGGCCCGGCTCTGCGCCCGGGCCAACGTGCTTTCTCTTGTAGACGAAAAGAATTTTCACCAGAACTATTTGCGCC ACATGCGCTTCGGAGCATAA
Downstream 100 bases:
>100_bases ACTGGCCCCCGGGTGTTGCAAGACTAACAATATGTCTTCTCAACGCATGCAGGCCGCCTTTTATGGCGTGCAGCCGTGCA TGCGTACAGCGCCGGCCACT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 659; Mature: 658
Protein sequence:
>659_residues MSDQSKKDSRPPRPQQDEKTRGRGDRPSRPGKPAGAGADKAERRRPGKDKTGGRSDQGSHGDTAGNGRSRGGRPAGPEMG GTSRGAGADKKRAERPAPGGKPGEAGRDGRGRPGHKGPDDNRSGGRGAARPSGKSRQEHTPGRGLRDAREIRAPRRDGAY GTAWQGAEALFPPLMEEARHILEQLPQALSRVWPLSKAHRRTLPDDVARLSRLLTTERAALDRPYWSSPAFVSAYLYYFL PWNLVRLTRLLSAMPLPDPHLAAPQGGKALLLDVGSGPLTLPLALWLARPQWRQAPIQVLALDNSSQPLDLGRALLEELA GLTFHEPWAVQVARGQMEHAARHAAPLLAGGGTRPWLVSAANVLNELRFGKRSGRGSSLEERLGLLDDDAPDDFGSADDM EDMGDDGLSGGSHMLRPGRARGREAADGERPEDCRQEKLVRFLDSLAPLFHSRYAAPQGPALLFVEPGTRLGGSTIMDLR QLAVEGGLTALAPCPHQAACPLSGGQGGRTWCHFTFGSEGAPRWLEGLSADSGLAKSGLSLAPLLLAPVPPAEAARMAPE GPHGHGRPPRSGVMKARVLTAPFAVPGLAGRGRYACSACGLLLLEDADGLPSGHMLDVNVPPDAARDAKSGARIVRRPGT SSSVQAPRRGQGRNERGGR
Sequences:
>Translated_659_residues MSDQSKKDSRPPRPQQDEKTRGRGDRPSRPGKPAGAGADKAERRRPGKDKTGGRSDQGSHGDTAGNGRSRGGRPAGPEMG GTSRGAGADKKRAERPAPGGKPGEAGRDGRGRPGHKGPDDNRSGGRGAARPSGKSRQEHTPGRGLRDAREIRAPRRDGAY GTAWQGAEALFPPLMEEARHILEQLPQALSRVWPLSKAHRRTLPDDVARLSRLLTTERAALDRPYWSSPAFVSAYLYYFL PWNLVRLTRLLSAMPLPDPHLAAPQGGKALLLDVGSGPLTLPLALWLARPQWRQAPIQVLALDNSSQPLDLGRALLEELA GLTFHEPWAVQVARGQMEHAARHAAPLLAGGGTRPWLVSAANVLNELRFGKRSGRGSSLEERLGLLDDDAPDDFGSADDM EDMGDDGLSGGSHMLRPGRARGREAADGERPEDCRQEKLVRFLDSLAPLFHSRYAAPQGPALLFVEPGTRLGGSTIMDLR QLAVEGGLTALAPCPHQAACPLSGGQGGRTWCHFTFGSEGAPRWLEGLSADSGLAKSGLSLAPLLLAPVPPAEAARMAPE GPHGHGRPPRSGVMKARVLTAPFAVPGLAGRGRYACSACGLLLLEDADGLPSGHMLDVNVPPDAARDAKSGARIVRRPGT SSSVQAPRRGQGRNERGGR >Mature_658_residues SDQSKKDSRPPRPQQDEKTRGRGDRPSRPGKPAGAGADKAERRRPGKDKTGGRSDQGSHGDTAGNGRSRGGRPAGPEMGG TSRGAGADKKRAERPAPGGKPGEAGRDGRGRPGHKGPDDNRSGGRGAARPSGKSRQEHTPGRGLRDAREIRAPRRDGAYG TAWQGAEALFPPLMEEARHILEQLPQALSRVWPLSKAHRRTLPDDVARLSRLLTTERAALDRPYWSSPAFVSAYLYYFLP WNLVRLTRLLSAMPLPDPHLAAPQGGKALLLDVGSGPLTLPLALWLARPQWRQAPIQVLALDNSSQPLDLGRALLEELAG LTFHEPWAVQVARGQMEHAARHAAPLLAGGGTRPWLVSAANVLNELRFGKRSGRGSSLEERLGLLDDDAPDDFGSADDME DMGDDGLSGGSHMLRPGRARGREAADGERPEDCRQEKLVRFLDSLAPLFHSRYAAPQGPALLFVEPGTRLGGSTIMDLRQ LAVEGGLTALAPCPHQAACPLSGGQGGRTWCHFTFGSEGAPRWLEGLSADSGLAKSGLSLAPLLLAPVPPAEAARMAPEG PHGHGRPPRSGVMKARVLTAPFAVPGLAGRGRYACSACGLLLLEDADGLPSGHMLDVNVPPDAARDAKSGARIVRRPGTS SSVQAPRRGQGRNERGGR
Specific function: Unknown
COG id: COG5459
COG function: function code J; Predicted rRNA methylase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 70006; Mature: 69875
Theoretical pI: Translated: 10.69; Mature: 10.69
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDQSKKDSRPPRPQQDEKTRGRGDRPSRPGKPAGAGADKAERRRPGKDKTGGRSDQGSH CCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCC GDTAGNGRSRGGRPAGPEMGGTSRGAGADKKRAERPAPGGKPGEAGRDGRGRPGHKGPDD CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC NRSGGRGAARPSGKSRQEHTPGRGLRDAREIRAPRRDGAYGTAWQGAEALFPPLMEEARH CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHH ILEQLPQALSRVWPLSKAHRRTLPDDVARLSRLLTTERAALDRPYWSSPAFVSAYLYYFL HHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH PWNLVRLTRLLSAMPLPDPHLAAPQGGKALLLDVGSGPLTLPLALWLARPQWRQAPIQVL HHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCHHCCCEEEE ALDNSSQPLDLGRALLEELAGLTFHEPWAVQVARGQMEHAARHAAPLLAGGGTRPWLVSA EECCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCHHCCCCCCHHHHHH ANVLNELRFGKRSGRGSSLEERLGLLDDDAPDDFGSADDMEDMGDDGLSGGSHMLRPGRA HHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCHH RGREAADGERPEDCRQEKLVRFLDSLAPLFHSRYAAPQGPALLFVEPGTRLGGSTIMDLR CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHH QLAVEGGLTALAPCPHQAACPLSGGQGGRTWCHFTFGSEGAPRWLEGLSADSGLAKSGLS HHHHHCCCCEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHCCCCCCHHHCCCC LAPLLLAPVPPAEAARMAPEGPHGHGRPPRSGVMKARVLTAPFAVPGLAGRGRYACSACG HHHHHHCCCCCHHHHHCCCCCCCCCCCCCHHHHHHHHHEECCCCCCCCCCCCCHHHHHCC LLLLEDADGLPSGHMLDVNVPPDAARDAKSGARIVRRPGTSSSVQAPRRGQGRNERGGR EEEEECCCCCCCCCEEEECCCCCHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure SDQSKKDSRPPRPQQDEKTRGRGDRPSRPGKPAGAGADKAERRRPGKDKTGGRSDQGSH CCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCC GDTAGNGRSRGGRPAGPEMGGTSRGAGADKKRAERPAPGGKPGEAGRDGRGRPGHKGPDD CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC NRSGGRGAARPSGKSRQEHTPGRGLRDAREIRAPRRDGAYGTAWQGAEALFPPLMEEARH CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHH ILEQLPQALSRVWPLSKAHRRTLPDDVARLSRLLTTERAALDRPYWSSPAFVSAYLYYFL HHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH PWNLVRLTRLLSAMPLPDPHLAAPQGGKALLLDVGSGPLTLPLALWLARPQWRQAPIQVL HHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCHHCCCEEEE ALDNSSQPLDLGRALLEELAGLTFHEPWAVQVARGQMEHAARHAAPLLAGGGTRPWLVSA EECCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCHHCCCCCCHHHHHH ANVLNELRFGKRSGRGSSLEERLGLLDDDAPDDFGSADDMEDMGDDGLSGGSHMLRPGRA HHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCHH RGREAADGERPEDCRQEKLVRFLDSLAPLFHSRYAAPQGPALLFVEPGTRLGGSTIMDLR CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHH QLAVEGGLTALAPCPHQAACPLSGGQGGRTWCHFTFGSEGAPRWLEGLSADSGLAKSGLS HHHHHCCCCEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHCCCCCCHHHCCCC LAPLLLAPVPPAEAARMAPEGPHGHGRPPRSGVMKARVLTAPFAVPGLAGRGRYACSACG HHHHHHCCCCCHHHHHCCCCCCCCCCCCCHHHHHHHHHEECCCCCCCCCCCCCHHHHHCC LLLLEDADGLPSGHMLDVNVPPDAARDAKSGARIVRRPGTSSSVQAPRRGQGRNERGGR EEEEECCCCCCCCCEEEECCCCCHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA