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The map label for this gene is rimM [H]

Identifier: 220905064

GI number: 220905064

Start: 2175945

End: 2176451

Strand: Reverse

Name: rimM [H]

Synonym: Ddes_1801

Alternate gene names: 220905064

Gene position: 2176451-2175945 (Counterclockwise)

Preceding gene: 220905065

Following gene: 220905063

Centisome position: 75.74

GC content: 57.99

Gene sequence:

>507_bases
ATGGGTACGCTTGCGCGGCCCCACGGCATTAAAGGGGAGATCTGCATCGACTGGTATGCGGACTCCCCCTTGCTTTTGAC
AACCCCGCTCTGGATTCAGGCGGGCGATGGCGAACCGCGCCGGGTGCGTCAGGTGGCTGTGCGCAGCCACAAGGGGCGTC
CGCTGCTTCAGCTTGAAGGCGTGGTTGACCGCAATGCCGTTGAAGGGCTGCGCGGCTGCAAACTCTTGACCAAACGCGAA
GCCCTGCCGGAACCGGAAGATGACGAAGTCTATCTGGAAGACCTGCTGGGGGGCGATGTTTTTCTGCCGGACGGAAAACG
CCTGGGTACACTCGACCACTTTGAATATCCCGCGGGGCTTGAGATGTGGGTCATCATGACCGATGACAACCGCGAAGTGC
TCTTTCCTGCAAGGCCAGAATTTATTGCGGGCTTTGATCTGGAAGGTCCGGCCGTCATTATTGATCCGCCGGAAGGCCTG
CTGGATATCTATCTTTCTGAAAAATAG

Upstream 100 bases:

>100_bases
GCGCACCATTCTGAGTGCCGCTTCCATCAAGTGCAAAAAACGCACTGTGCTGGAAATACTGGAATAGCGTCTGGAAGTTA
TGGCCGATTCTTGGATTCAT

Downstream 100 bases:

>100_bases
CCCGTATGTGGGGCATGCTGTGTATAAACCCGCGCAAGCGGGTTTTTTACTTGCGAACCTTTGCTGCCCGGCCTTGCCAT
GCAGTAGGCGCGCCTTATAG

Product: 16S rRNA processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 168; Mature: 167

Protein sequence:

>168_residues
MGTLARPHGIKGEICIDWYADSPLLLTTPLWIQAGDGEPRRVRQVAVRSHKGRPLLQLEGVVDRNAVEGLRGCKLLTKRE
ALPEPEDDEVYLEDLLGGDVFLPDGKRLGTLDHFEYPAGLEMWVIMTDDNREVLFPARPEFIAGFDLEGPAVIIDPPEGL
LDIYLSEK

Sequences:

>Translated_168_residues
MGTLARPHGIKGEICIDWYADSPLLLTTPLWIQAGDGEPRRVRQVAVRSHKGRPLLQLEGVVDRNAVEGLRGCKLLTKRE
ALPEPEDDEVYLEDLLGGDVFLPDGKRLGTLDHFEYPAGLEMWVIMTDDNREVLFPARPEFIAGFDLEGPAVIIDPPEGL
LDIYLSEK
>Mature_167_residues
GTLARPHGIKGEICIDWYADSPLLLTTPLWIQAGDGEPRRVRQVAVRSHKGRPLLQLEGVVDRNAVEGLRGCKLLTKREA
LPEPEDDEVYLEDLLGGDVFLPDGKRLGTLDHFEYPAGLEMWVIMTDDNREVLFPARPEFIAGFDLEGPAVIIDPPEGLL
DIYLSEK

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000 [H]

Pfam domain/function: PF05239 PRC; PF01782 RimM [H]

EC number: NA

Molecular weight: Translated: 18758; Mature: 18627

Theoretical pI: Translated: 4.34; Mature: 4.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGTLARPHGIKGEICIDWYADSPLLLTTPLWIQAGDGEPRRVRQVAVRSHKGRPLLQLEG
CCCCCCCCCCCCCEEEEEECCCCEEEECCEEEEECCCCHHHHHHHHHHCCCCCEEEEECC
VVDRNAVEGLRGCKLLTKREALPEPEDDEVYLEDLLGGDVFLPDGKRLGTLDHFEYPAGL
CCCCHHHHHHHHCEEEHHHHCCCCCCCCCEEEEHHCCCCEECCCCCCCCCCCCCCCCCCC
EMWVIMTDDNREVLFPARPEFIAGFDLEGPAVIIDPPEGLLDIYLSEK
EEEEEEECCCCEEEECCCCCEEEEECCCCCEEEECCCCCEEEEEEECC
>Mature Secondary Structure 
GTLARPHGIKGEICIDWYADSPLLLTTPLWIQAGDGEPRRVRQVAVRSHKGRPLLQLEG
CCCCCCCCCCCCEEEEEECCCCEEEECCEEEEECCCCHHHHHHHHHHCCCCCEEEEECC
VVDRNAVEGLRGCKLLTKREALPEPEDDEVYLEDLLGGDVFLPDGKRLGTLDHFEYPAGL
CCCCHHHHHHHHCEEEHHHHCCCCCCCCCEEEEHHCCCCEECCCCCCCCCCCCCCCCCCC
EMWVIMTDDNREVLFPARPEFIAGFDLEGPAVIIDPPEGLLDIYLSEK
EEEEEEECCCCEEEECCCCCEEEEECCCCCEEEECCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA