| Definition | Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 chromosome, complete genome. |
|---|---|
| Accession | NC_011883 |
| Length | 2,873,437 |
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The map label for this gene is 220904337
Identifier: 220904337
GI number: 220904337
Start: 1246294
End: 1248108
Strand: Direct
Name: 220904337
Synonym: Ddes_1064
Alternate gene names: NA
Gene position: 1246294-1248108 (Clockwise)
Preceding gene: 220904336
Following gene: 220904338
Centisome position: 43.37
GC content: 60.66
Gene sequence:
>1815_bases ATGACCGCTATGACCAGAGACGGCCAGCCTTCAGGCCGGTTTCCTATCCTTGATTACGCTTATACGCACGAACAGACGCA GGCCACCACCGGCTATTTTTCCTGTGTGCCGCCTGAGGGCCTGGGGTTCGAGGCAGCCCTCGAGCGCCTTGAAGCCGCGC CTATGGATGATTTTCTTCATCTGCATCTTCTCCGTCATCTGAGTGCGCAAAATACGGACTATCTGGCCGGGCTTGCGGCC TTGTGCCATGATGAAAAAAAGGATGATTTCGTGCGTCCTGTTCTGGCTGCCCTGCTGCTGGAGTGCGCGATTCTTGTGCC GCAGCATGAAAAAGCCTGCGCAGCCTTTCCCGCCGATGCTGCGGCTCGCCTGGCGCATGCCAGTCCGGCACTGTACCTGC GGGCGGTTTGCCGTTCCGACATGGAGACCGCAGCAGCGTGGAGCGAGCTGTTCCGGAACAATATTTGTGGGCATCATGCG CTGCCGCGCCCGGAAGAGGCAGGCATTCCTTTGCTTTTCAGCCAGAAAAGCATTGCGGAAACAGCCCGGGGTATGGCAGC CGGGGCAGGCTCCATCGTCGCGCACCATGAGCGGCTAGCTGCGGAGGCTGCCCCTGCATGGCAGCGCCCTCCAGCCCAGG AGACATTTTTGCGCGCCCTGGATGCCCTGATGGAGGCGGGTATTATTGCCGGTCCGGAAATGCGTCACGAAGCATCGCTT TCGCCCATAGCACTGCTGCGGGCATGGCAGGTGGATATGGAGGTGTGCTGCGGCGCGGCACGTCACCGCTTGCGTGGTCA GGCCACTGCTTATGGCCGGGGGCTGTCTCTTGCTGCGGCGCGTGCCTCTTATGCCATGGAGATTGTGGAGCGTTCCAGTG CTTACGTCAGTATCGGGCCATCGGATGACGGATGCGATGGTGATTGCGAGCGGGCGGAAGTCGGGCAGGTGCGCAACCGC AAGCAGCCGCTGCCGCTGGTGAAGGCCCGTTTTTCCGAGTTGCAGGCATGGGGCAGGGCAGCTCTGGATCCCAACATGTT GCCTGTGGAAACCCCGTACGAAGACTCTCCTTTGCACTGGCTGCCAGCCGTGGCACCGGATGGAAGCGGGGTTCTTGTGC CGGCCCAGGCAGTATTTTTGTTCTGCAACCTTGATGAGCAGGCTCTTTTTCTGGCCGGTGGTTCTACAGGGCTTGCATCG GGCAACACGCTGGATGAAGCCCGGCAGGCGGCGTTGACGGAAATATTCGAGCGCGATGCCGAAGCCACCACGCCTTACAG CCGCTCACGCTGCTTTGTCCTGAAAAGCCGTGATGCGCGTCTGCAATCCCTGCTGGATGATTATGCCGCTTGCGGCATCA ATGTACAGTTTCAGGACATTACTACTGAATTCGGGCTGCCCGTGTACCAGTGTTTTGTTATGGGACGCGATGGCGTCCTT GCCCGGGCCACGGGTGCGGGGCTGAGCGGCCCGCGCGCCGCCCTTGCCGCACTGACGGAAACCCCCTGGCCCTATTCCAC CTCGCAAGCCGTTCGGCCTACGCCTTCCGGCCCCGGCCTTGCCGGGCTCCCCGTGCGTATGCTGGAAGACCTGCCGGACT ACAGCCTGCCATCGCCCGCCGACAATTGCCGCCTGCTGGAGGCCATATTGGCTGATCACGGCAAAAAACCACTTTATGTG GATATAAGCCGGGCGGACCTTGATTTGCCTGTTGTGCGGGCCATTGTCCCCCATCTCTCACTCACCGGAGAATGGGACAG GTTTTCGCGGCCGGATATGCGGATTTTTGCGCGTTACCTTAATCTGTTTACCTGA
Upstream 100 bases:
>100_bases CGCCGCGCCATCGGGCGTTTTTATGCGGATTTTTCCCAGTAAAACTGTATGATCTGTGGCTGCCGGTGGTCCGCATGTCC ACATGCCAAAGAGAGTTGCC
Downstream 100 bases:
>100_bases TTTTTACGGGCTTATGGCTTTTCTGAATTGCAGGCTATGCTCAAGTTGTTTATAGTGTGGGCCTGATGGCCGCGTCCTTG TGGCACGGCCCTGTGAAAAC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 604; Mature: 603
Protein sequence:
>604_residues MTAMTRDGQPSGRFPILDYAYTHEQTQATTGYFSCVPPEGLGFEAALERLEAAPMDDFLHLHLLRHLSAQNTDYLAGLAA LCHDEKKDDFVRPVLAALLLECAILVPQHEKACAAFPADAAARLAHASPALYLRAVCRSDMETAAAWSELFRNNICGHHA LPRPEEAGIPLLFSQKSIAETARGMAAGAGSIVAHHERLAAEAAPAWQRPPAQETFLRALDALMEAGIIAGPEMRHEASL SPIALLRAWQVDMEVCCGAARHRLRGQATAYGRGLSLAAARASYAMEIVERSSAYVSIGPSDDGCDGDCERAEVGQVRNR KQPLPLVKARFSELQAWGRAALDPNMLPVETPYEDSPLHWLPAVAPDGSGVLVPAQAVFLFCNLDEQALFLAGGSTGLAS GNTLDEARQAALTEIFERDAEATTPYSRSRCFVLKSRDARLQSLLDDYAACGINVQFQDITTEFGLPVYQCFVMGRDGVL ARATGAGLSGPRAALAALTETPWPYSTSQAVRPTPSGPGLAGLPVRMLEDLPDYSLPSPADNCRLLEAILADHGKKPLYV DISRADLDLPVVRAIVPHLSLTGEWDRFSRPDMRIFARYLNLFT
Sequences:
>Translated_604_residues MTAMTRDGQPSGRFPILDYAYTHEQTQATTGYFSCVPPEGLGFEAALERLEAAPMDDFLHLHLLRHLSAQNTDYLAGLAA LCHDEKKDDFVRPVLAALLLECAILVPQHEKACAAFPADAAARLAHASPALYLRAVCRSDMETAAAWSELFRNNICGHHA LPRPEEAGIPLLFSQKSIAETARGMAAGAGSIVAHHERLAAEAAPAWQRPPAQETFLRALDALMEAGIIAGPEMRHEASL SPIALLRAWQVDMEVCCGAARHRLRGQATAYGRGLSLAAARASYAMEIVERSSAYVSIGPSDDGCDGDCERAEVGQVRNR KQPLPLVKARFSELQAWGRAALDPNMLPVETPYEDSPLHWLPAVAPDGSGVLVPAQAVFLFCNLDEQALFLAGGSTGLAS GNTLDEARQAALTEIFERDAEATTPYSRSRCFVLKSRDARLQSLLDDYAACGINVQFQDITTEFGLPVYQCFVMGRDGVL ARATGAGLSGPRAALAALTETPWPYSTSQAVRPTPSGPGLAGLPVRMLEDLPDYSLPSPADNCRLLEAILADHGKKPLYV DISRADLDLPVVRAIVPHLSLTGEWDRFSRPDMRIFARYLNLFT >Mature_603_residues TAMTRDGQPSGRFPILDYAYTHEQTQATTGYFSCVPPEGLGFEAALERLEAAPMDDFLHLHLLRHLSAQNTDYLAGLAAL CHDEKKDDFVRPVLAALLLECAILVPQHEKACAAFPADAAARLAHASPALYLRAVCRSDMETAAAWSELFRNNICGHHAL PRPEEAGIPLLFSQKSIAETARGMAAGAGSIVAHHERLAAEAAPAWQRPPAQETFLRALDALMEAGIIAGPEMRHEASLS PIALLRAWQVDMEVCCGAARHRLRGQATAYGRGLSLAAARASYAMEIVERSSAYVSIGPSDDGCDGDCERAEVGQVRNRK QPLPLVKARFSELQAWGRAALDPNMLPVETPYEDSPLHWLPAVAPDGSGVLVPAQAVFLFCNLDEQALFLAGGSTGLASG NTLDEARQAALTEIFERDAEATTPYSRSRCFVLKSRDARLQSLLDDYAACGINVQFQDITTEFGLPVYQCFVMGRDGVLA RATGAGLSGPRAALAALTETPWPYSTSQAVRPTPSGPGLAGLPVRMLEDLPDYSLPSPADNCRLLEAILADHGKKPLYVD ISRADLDLPVVRAIVPHLSLTGEWDRFSRPDMRIFARYLNLFT
Specific function: Unknown
COG id: COG1944
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 65393; Mature: 65262
Theoretical pI: Translated: 5.26; Mature: 5.26
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.5 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTAMTRDGQPSGRFPILDYAYTHEQTQATTGYFSCVPPEGLGFEAALERLEAAPMDDFLH CCCCCCCCCCCCCCCEEEEHHCCCHHHCCCCEEEECCCCCCCHHHHHHHHHCCCHHHHHH LHLLRHLSAQNTDYLAGLAALCHDEKKDDFVRPVLAALLLECAILVPQHEKACAAFPADA HHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCHH AARLAHASPALYLRAVCRSDMETAAAWSELFRNNICGHHALPRPEEAGIPLLFSQKSIAE HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCHHHHH TARGMAAGAGSIVAHHERLAAEAAPAWQRPPAQETFLRALDALMEAGIIAGPEMRHEASL HHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHCCC SPIALLRAWQVDMEVCCGAARHRLRGQATAYGRGLSLAAARASYAMEIVERSSAYVSIGP CHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECC SDDGCDGDCERAEVGQVRNRKQPLPLVKARFSELQAWGRAALDPNMLPVETPYEDSPLHW CCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCE LPAVAPDGSGVLVPAQAVFLFCNLDEQALFLAGGSTGLASGNTLDEARQAALTEIFERDA ECCCCCCCCCEEEECEEEEEEECCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCC EATTPYSRSRCFVLKSRDARLQSLLDDYAACGINVQFQDITTEFGLPVYQCFVMGRDGVL CCCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCEEEHHHHHHHCCHHHHHHEECCCCCE ARATGAGLSGPRAALAALTETPWPYSTSQAVRPTPSGPGLAGLPVRMLEDLPDYSLPSPA EEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCC DNCRLLEAILADHGKKPLYVDISRADLDLPVVRAIVPHLSLTGEWDRFSRPDMRIFARYL HHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH NLFT HHCC >Mature Secondary Structure TAMTRDGQPSGRFPILDYAYTHEQTQATTGYFSCVPPEGLGFEAALERLEAAPMDDFLH CCCCCCCCCCCCCCEEEEHHCCCHHHCCCCEEEECCCCCCCHHHHHHHHHCCCHHHHHH LHLLRHLSAQNTDYLAGLAALCHDEKKDDFVRPVLAALLLECAILVPQHEKACAAFPADA HHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCHH AARLAHASPALYLRAVCRSDMETAAAWSELFRNNICGHHALPRPEEAGIPLLFSQKSIAE HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCHHHHH TARGMAAGAGSIVAHHERLAAEAAPAWQRPPAQETFLRALDALMEAGIIAGPEMRHEASL HHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHCCC SPIALLRAWQVDMEVCCGAARHRLRGQATAYGRGLSLAAARASYAMEIVERSSAYVSIGP CHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECC SDDGCDGDCERAEVGQVRNRKQPLPLVKARFSELQAWGRAALDPNMLPVETPYEDSPLHW CCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCE LPAVAPDGSGVLVPAQAVFLFCNLDEQALFLAGGSTGLASGNTLDEARQAALTEIFERDA ECCCCCCCCCEEEECEEEEEEECCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCC EATTPYSRSRCFVLKSRDARLQSLLDDYAACGINVQFQDITTEFGLPVYQCFVMGRDGVL CCCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCEEEHHHHHHHCCHHHHHHEECCCCCE ARATGAGLSGPRAALAALTETPWPYSTSQAVRPTPSGPGLAGLPVRMLEDLPDYSLPSPA EEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCC DNCRLLEAILADHGKKPLYVDISRADLDLPVVRAIVPHLSLTGEWDRFSRPDMRIFARYL HHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH NLFT HHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA