| Definition | Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 chromosome, complete genome. |
|---|---|
| Accession | NC_011883 |
| Length | 2,873,437 |
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The map label for this gene is vipC [H]
Identifier: 220904286
GI number: 220904286
Start: 1182490
End: 1184928
Strand: Direct
Name: vipC [H]
Synonym: Ddes_1013
Alternate gene names: 220904286
Gene position: 1182490-1184928 (Clockwise)
Preceding gene: 220904285
Following gene: 220904287
Centisome position: 41.15
GC content: 53.83
Gene sequence:
>2439_bases ATGGCGATTTCAGATTTTATCAAGGGCGCGCCCATGCGCCCGCCATCCCATTTTATCGGACCCGTGGCATGGTGGAGCGA TTCTTTGACATGCCGTGGTGTTGAAAGGCAGGTTGTACATAGCGCCAGATATTTTCATCAAAAAAAGAAAAAGATTACAT TGCTCTGCCGGACCATTGCGCCTGGTGGCGGAAATGATTTTTTTCTTGAAGATGCACGAGCCTGCAGCCGGGTGTTGGGG TTTTCACTGGATGTAGTGGACCGCGACCTCTTTGATAAGGCGCGCGGCATTATTGGATCGTTTGTATCTGGCGCTTCGCC TGTTTTTATAGACAGCATTGCTGCATATGCGGCATGGCTGTTGCGTGTGCGCCCCAGGATGCTGCACATATGGAATGCTG ATCACCTGGAGCCGTTGCTGGCAGCCCTGATTGCCGGTGTACCCAATATTGTTATTGCCGGGCAGAGCCTTTCCCCTGCC CAGCGTGCTCCTCGCGGTTTTGAAAGTGTCAATGACCGTACCGCATTTGCGATTCTGGCAAATGTCATGCGGCTCCCTCA TGTGGTCATGACAAATAACAGCCGTGCGGGATGTACCGCCTACGAAGAATGGCTTGGTCTTCCCCCGGGAACTGTTCGCC TTACCCCCAATATTTTTGATCTGGCAGCATGGCCGCGCCCGGCAGATGCCCAGGTGGCCGAACTGAGAGCGGCGCTGGGT ATTCCTGCAAATGCGCGTGTGCTTGGGGGGCTTTTTCGCTTTGTTTCCATCAAGGATCCGGAACTGTGGGTCAGTGCTGC CATCCGGGCTTGCGCAGCCGTGCCAGATCTTTATGCAGTTGTGGGCGGGGATGGCCTGGAACTGGAATCCATGAAATCTC GTATTGCAGAAACGCCTTTTGCAGGACGCATACTGTTTCCCGGGCCTGTCAGGGATGTGCCTGCCTTCTTGTCCATGTGT TCTGTTTTTTTGCATACTGCTCATGTGGAGGGGCTGCCAAATGCCCTTCTGGAGGCGCAAGCCTATGAAGTGCCTGTGGT CACTACGCACTGTGGTGGGGCCGCGGATGTGGTGGAGCATGGCAAAAGCGGTTTTGTGGTGGAAGAGAGGGATGCTGTCG CTCTTGCCAAGTATGTAGAATATCTGCTTGATCATCAGGCTTTTGCCAATAGCGCCGGTCAGGCCGGGCGGCAGCGTGTA ACGGAAAATTTTTCTCCAGAGCGCACAATGGGCATGCTGTGGGATGTCTATAGCGATATTTTCCCCGACGATTTTCCGAT CAGAACAGCACCGCAGGAAGATACGGCTTGTGCCGGACTGGAAGTGGTGGGTAAAGTTTGTCCGCTGGTCAGTATTGTGT TGCCGACCTACAATCATCTTTCGTTTCTTCCTCTGGCCATTGAATCTGTTTTGGGGCAGGATTATCCCAATTTTGAACTT GTCATTGTTGATGACGGCTCTACAGACGGCACGGCAAGTTATCTTGAAACGCTCGATTCACCTCACATACGTGTTGAAAG CGGGCCAAACACCAGGCTTCCTGCCGCGCTCAATCGTGGGTTCGCGTTGGCGCGGGGCGAGTACCTTACGTGGGTTTCGG CAGACAACATCTGCCTGCCGCATTTTTGCAGTTCTCTTGCCGGTGCGCTGAGCGCATTTCCCCAGGCGGGGTTTGCTTCA GGGGGCTTTGCGCGTATTTCCCAGCAGGGGTGGATTCTTGACCATCTTGCAGGGGCGGTTTCGCTGGATACACTTCTTTG CAGTAACAGCGGCATAGCTGCTTTTATGTACCGCAGGGATGTAGCCATGCAGGTGGGAGAGTACGACCCCAGGCTTGAAG GCGCTGAGGATTGGGACATGTGGCTGCGTATGCTGGATGTAACGTTGCCCGTGTCTGTGCCGCATGTTCTCTATCACTAC CGCTTGCACGACAATTCCATGACAGCGAGGCTGTCGGAAAAAGTTAGGGAAAGTTCGACCAGAACAGCATTCAAGGCGTT GCGCCGGTTGGAGCAGGGTGGTGGCATACGCAAGCTTTTTCCCCAGATTGAAGACTGTAAGAATCAGGAGCTTGCGCTCT TTCATGCACATCTGGTCATGGGAAGCCGTATGATACAGCCAGGATCATTTCTGAAGCAGGCAGCGGCCAGATACCTGGGC GTTGCGTACGGCATGCGCCCTGACGATCTGCTTGTTATGGGTAACTATGCTGTTGCGCTGCTCTGGCAAGGACGGCACGA TATGGCAAACGAGCTGTTTTGCCGTGGAAAAGCGCAGGCGACCGAGCTTTTTGAAGCTCTTCAATCTGCATGTGCAAAGC AGCAACGCAATGTCGGCAGGCATGAGTTTAATTGTCCGACGCTGCAATGTCCTGGTCCTGAAGAAAGTGAATTGCTGGGG CGAGTGGCCGCATCCCGGCTCAGATTTACTGACTGTTAA
Upstream 100 bases:
>100_bases TGCTTGATTCTGGCAGGTGTCAAAAAAATATCGTAACCTGCCGCTATGCCTCTGTCTTTGAAAATATCTGACATGACGCG GAACCACCGGGGAAGATTCA
Downstream 100 bases:
>100_bases CCGTACCCCATAGGCAGGAACTTGTATGGCCTCACTCCGGAATGCTACATCAGAGGTAGAGTTTTACCTTGTTGATGCCT TTGAGATATTTCACTATCTG
Product: group 1 glycosyl transferase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 812; Mature: 811
Protein sequence:
>812_residues MAISDFIKGAPMRPPSHFIGPVAWWSDSLTCRGVERQVVHSARYFHQKKKKITLLCRTIAPGGGNDFFLEDARACSRVLG FSLDVVDRDLFDKARGIIGSFVSGASPVFIDSIAAYAAWLLRVRPRMLHIWNADHLEPLLAALIAGVPNIVIAGQSLSPA QRAPRGFESVNDRTAFAILANVMRLPHVVMTNNSRAGCTAYEEWLGLPPGTVRLTPNIFDLAAWPRPADAQVAELRAALG IPANARVLGGLFRFVSIKDPELWVSAAIRACAAVPDLYAVVGGDGLELESMKSRIAETPFAGRILFPGPVRDVPAFLSMC SVFLHTAHVEGLPNALLEAQAYEVPVVTTHCGGAADVVEHGKSGFVVEERDAVALAKYVEYLLDHQAFANSAGQAGRQRV TENFSPERTMGMLWDVYSDIFPDDFPIRTAPQEDTACAGLEVVGKVCPLVSIVLPTYNHLSFLPLAIESVLGQDYPNFEL VIVDDGSTDGTASYLETLDSPHIRVESGPNTRLPAALNRGFALARGEYLTWVSADNICLPHFCSSLAGALSAFPQAGFAS GGFARISQQGWILDHLAGAVSLDTLLCSNSGIAAFMYRRDVAMQVGEYDPRLEGAEDWDMWLRMLDVTLPVSVPHVLYHY RLHDNSMTARLSEKVRESSTRTAFKALRRLEQGGGIRKLFPQIEDCKNQELALFHAHLVMGSRMIQPGSFLKQAAARYLG VAYGMRPDDLLVMGNYAVALLWQGRHDMANELFCRGKAQATELFEALQSACAKQQRNVGRHEFNCPTLQCPGPEESELLG RVAASRLRFTDC
Sequences:
>Translated_812_residues MAISDFIKGAPMRPPSHFIGPVAWWSDSLTCRGVERQVVHSARYFHQKKKKITLLCRTIAPGGGNDFFLEDARACSRVLG FSLDVVDRDLFDKARGIIGSFVSGASPVFIDSIAAYAAWLLRVRPRMLHIWNADHLEPLLAALIAGVPNIVIAGQSLSPA QRAPRGFESVNDRTAFAILANVMRLPHVVMTNNSRAGCTAYEEWLGLPPGTVRLTPNIFDLAAWPRPADAQVAELRAALG IPANARVLGGLFRFVSIKDPELWVSAAIRACAAVPDLYAVVGGDGLELESMKSRIAETPFAGRILFPGPVRDVPAFLSMC SVFLHTAHVEGLPNALLEAQAYEVPVVTTHCGGAADVVEHGKSGFVVEERDAVALAKYVEYLLDHQAFANSAGQAGRQRV TENFSPERTMGMLWDVYSDIFPDDFPIRTAPQEDTACAGLEVVGKVCPLVSIVLPTYNHLSFLPLAIESVLGQDYPNFEL VIVDDGSTDGTASYLETLDSPHIRVESGPNTRLPAALNRGFALARGEYLTWVSADNICLPHFCSSLAGALSAFPQAGFAS GGFARISQQGWILDHLAGAVSLDTLLCSNSGIAAFMYRRDVAMQVGEYDPRLEGAEDWDMWLRMLDVTLPVSVPHVLYHY RLHDNSMTARLSEKVRESSTRTAFKALRRLEQGGGIRKLFPQIEDCKNQELALFHAHLVMGSRMIQPGSFLKQAAARYLG VAYGMRPDDLLVMGNYAVALLWQGRHDMANELFCRGKAQATELFEALQSACAKQQRNVGRHEFNCPTLQCPGPEESELLG RVAASRLRFTDC >Mature_811_residues AISDFIKGAPMRPPSHFIGPVAWWSDSLTCRGVERQVVHSARYFHQKKKKITLLCRTIAPGGGNDFFLEDARACSRVLGF SLDVVDRDLFDKARGIIGSFVSGASPVFIDSIAAYAAWLLRVRPRMLHIWNADHLEPLLAALIAGVPNIVIAGQSLSPAQ RAPRGFESVNDRTAFAILANVMRLPHVVMTNNSRAGCTAYEEWLGLPPGTVRLTPNIFDLAAWPRPADAQVAELRAALGI PANARVLGGLFRFVSIKDPELWVSAAIRACAAVPDLYAVVGGDGLELESMKSRIAETPFAGRILFPGPVRDVPAFLSMCS VFLHTAHVEGLPNALLEAQAYEVPVVTTHCGGAADVVEHGKSGFVVEERDAVALAKYVEYLLDHQAFANSAGQAGRQRVT ENFSPERTMGMLWDVYSDIFPDDFPIRTAPQEDTACAGLEVVGKVCPLVSIVLPTYNHLSFLPLAIESVLGQDYPNFELV IVDDGSTDGTASYLETLDSPHIRVESGPNTRLPAALNRGFALARGEYLTWVSADNICLPHFCSSLAGALSAFPQAGFASG GFARISQQGWILDHLAGAVSLDTLLCSNSGIAAFMYRRDVAMQVGEYDPRLEGAEDWDMWLRMLDVTLPVSVPHVLYHYR LHDNSMTARLSEKVRESSTRTAFKALRRLEQGGGIRKLFPQIEDCKNQELALFHAHLVMGSRMIQPGSFLKQAAARYLGV AYGMRPDDLLVMGNYAVALLWQGRHDMANELFCRGKAQATELFEALQSACAKQQRNVGRHEFNCPTLQCPGPEESELLGR VAASRLRFTDC
Specific function: Slime polysaccharide colanic acid biosynthesis. [C]
COG id: COG0463
COG function: function code M; Glycosyltransferases involved in cell wall biogenesis
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1788372, Length=194, Percent_Identity=31.4432989690722, Blast_Score=71, Evalue=2e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001296 [H]
Pfam domain/function: PF00534 Glycos_transf_1 [H]
EC number: NA
Molecular weight: Translated: 88805; Mature: 88673
Theoretical pI: Translated: 6.51; Mature: 6.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAISDFIKGAPMRPPSHFIGPVAWWSDSLTCRGVERQVVHSARYFHQKKKKITLLCRTIA CCCHHHHCCCCCCCCHHHCCCHHHCCCCCEECCHHHHHHHHHHHHHHHHHHEEEEEEECC PGGGNDFFLEDARACSRVLGFSLDVVDRDLFDKARGIIGSFVSGASPVFIDSIAAYAAWL CCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH LRVRPRMLHIWNADHLEPLLAALIAGVPNIVIAGQSLSPAQRAPRGFESVNDRTAFAILA HHHCCHHEEEECCHHHHHHHHHHHCCCCCEEEECCCCCHHHHCCCCHHHCCCHHHHHHHH NVMRLPHVVMTNNSRAGCTAYEEWLGLPPGTVRLTPNIFDLAAWPRPADAQVAELRAALG HHHHCCEEEEECCCCCCCHHHHHHHCCCCCCEEECCCHHHHCCCCCCCCHHHHHHHHHHC IPANARVLGGLFRFVSIKDPELWVSAAIRACAAVPDLYAVVGGDGLELESMKSRIAETPF CCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHEEECCCCCCHHHHHHHHHCCCC AGRILFPGPVRDVPAFLSMCSVFLHTAHVEGLPNALLEAQAYEVPVVTTHCGGAADVVEH CCEEECCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCEEEECCCCHHHHHHC GKSGFVVEERDAVALAKYVEYLLDHQAFANSAGQAGRQRVTENFSPERTMGMLWDVYSDI CCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH FPDDFPIRTAPQEDTACAGLEVVGKVCPLVSIVLPTYNHLSFLPLAIESVLGQDYPNFEL CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCEEE VIVDDGSTDGTASYLETLDSPHIRVESGPNTRLPAALNRGFALARGEYLTWVSADNICLP EEEECCCCCCHHHHHHHCCCCCEEEECCCCCCCCHHHCCCEEEECCCEEEEECCCCEEHH HFCSSLAGALSAFPQAGFASGGFARISQQGWILDHLAGAVSLDTLLCSNSGIAAFMYRRD HHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCEEEHHHHH VAMQVGEYDPRLEGAEDWDMWLRMLDVTLPVSVPHVLYHYRLHDNSMTARLSEKVRESST HHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHH RTAFKALRRLEQGGGIRKLFPQIEDCKNQELALFHAHLVMGSRMIQPGSFLKQAAARYLG HHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH VAYGMRPDDLLVMGNYAVALLWQGRHDMANELFCRGKAQATELFEALQSACAKQQRNVGR HHCCCCCCCEEEECCEEEEEEECCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC HEFNCPTLQCPGPEESELLGRVAASRLRFTDC CCCCCCEEECCCCCHHHHHHHHHHHHHCCCCC >Mature Secondary Structure AISDFIKGAPMRPPSHFIGPVAWWSDSLTCRGVERQVVHSARYFHQKKKKITLLCRTIA CCHHHHCCCCCCCCHHHCCCHHHCCCCCEECCHHHHHHHHHHHHHHHHHHEEEEEEECC PGGGNDFFLEDARACSRVLGFSLDVVDRDLFDKARGIIGSFVSGASPVFIDSIAAYAAWL CCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH LRVRPRMLHIWNADHLEPLLAALIAGVPNIVIAGQSLSPAQRAPRGFESVNDRTAFAILA HHHCCHHEEEECCHHHHHHHHHHHCCCCCEEEECCCCCHHHHCCCCHHHCCCHHHHHHHH NVMRLPHVVMTNNSRAGCTAYEEWLGLPPGTVRLTPNIFDLAAWPRPADAQVAELRAALG HHHHCCEEEEECCCCCCCHHHHHHHCCCCCCEEECCCHHHHCCCCCCCCHHHHHHHHHHC IPANARVLGGLFRFVSIKDPELWVSAAIRACAAVPDLYAVVGGDGLELESMKSRIAETPF CCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHEEECCCCCCHHHHHHHHHCCCC AGRILFPGPVRDVPAFLSMCSVFLHTAHVEGLPNALLEAQAYEVPVVTTHCGGAADVVEH CCEEECCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCEEEECCCCHHHHHHC GKSGFVVEERDAVALAKYVEYLLDHQAFANSAGQAGRQRVTENFSPERTMGMLWDVYSDI CCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH FPDDFPIRTAPQEDTACAGLEVVGKVCPLVSIVLPTYNHLSFLPLAIESVLGQDYPNFEL CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCEEE VIVDDGSTDGTASYLETLDSPHIRVESGPNTRLPAALNRGFALARGEYLTWVSADNICLP EEEECCCCCCHHHHHHHCCCCCEEEECCCCCCCCHHHCCCEEEECCCEEEEECCCCEEHH HFCSSLAGALSAFPQAGFASGGFARISQQGWILDHLAGAVSLDTLLCSNSGIAAFMYRRD HHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCEEEHHHHH VAMQVGEYDPRLEGAEDWDMWLRMLDVTLPVSVPHVLYHYRLHDNSMTARLSEKVRESST HHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHH RTAFKALRRLEQGGGIRKLFPQIEDCKNQELALFHAHLVMGSRMIQPGSFLKQAAARYLG HHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH VAYGMRPDDLLVMGNYAVALLWQGRHDMANELFCRGKAQATELFEALQSACAKQQRNVGR HHCCCCCCCEEEECCEEEEEEECCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC HEFNCPTLQCPGPEESELLGRVAASRLRFTDC CCCCCCEEECCCCCHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8248629; 8331073; 11677608; 12644504 [H]