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The map label for this gene is ygbF [H]

Identifier: 220904202

GI number: 220904202

Start: 1083428

End: 1083736

Strand: Direct

Name: ygbF [H]

Synonym: Ddes_0929

Alternate gene names: 220904202

Gene position: 1083428-1083736 (Clockwise)

Preceding gene: 220904201

Following gene: 220904203

Centisome position: 37.7

GC content: 53.72

Gene sequence:

>309_bases
ATGCTGGTCATCGTAACTGAAGCAGTGCCGCAGCGCTTGCGTGGGTATTTGTCACGCTGGTTGCTGGAAGTTCGGGCAGG
CGTGTATGTGGGCAATTACTCAGTCCGTGTGCGGCAAAAATTATGGGAGGTGGTGTGCCAGCAGGTCGGTGACGGTAATG
CCGTTCTGGCCTGGACATCTTGCCACGAATCTGGTTTTCAATTTTTGACCGTTGGTGCCAACTGCCGGGAGCAGATAGAC
TGGGATGGCCTGCCACTTGTCGCGTATACTCCCAGGGACAATGATCGCGATGATTTGGTAGATTTGTGA

Upstream 100 bases:

>100_bases
CCAGCCATTGAAGAAGTGCTTTCTGCCGGAGGAATCGCCAAGCCAGAACGTCCCCCCGAGGCAGTGCCCATAGCCATTCC
CAACAAAAAGGGGCTTGGTG

Downstream 100 bases:

>100_bases
TGTTTCTGTAACGCGCTGATTTAGTATTTGTATTTATGAAGAGTGTTCCCCACGGGCGTGGGGATGAACCGTGAGCGTTA
TAAATATAGACTCTGGATGA

Product: CRISPR-associated protein Cas2

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 102; Mature: 102

Protein sequence:

>102_residues
MLVIVTEAVPQRLRGYLSRWLLEVRAGVYVGNYSVRVRQKLWEVVCQQVGDGNAVLAWTSCHESGFQFLTVGANCREQID
WDGLPLVAYTPRDNDRDDLVDL

Sequences:

>Translated_102_residues
MLVIVTEAVPQRLRGYLSRWLLEVRAGVYVGNYSVRVRQKLWEVVCQQVGDGNAVLAWTSCHESGFQFLTVGANCREQID
WDGLPLVAYTPRDNDRDDLVDL
>Mature_102_residues
MLVIVTEAVPQRLRGYLSRWLLEVRAGVYVGNYSVRVRQKLWEVVCQQVGDGNAVLAWTSCHESGFQFLTVGANCREQID
WDGLPLVAYTPRDNDRDDLVDL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87082153, Length=91, Percent_Identity=53.8461538461538, Blast_Score=104, Evalue=9e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010152 [H]

Pfam domain/function: PF09707 Cas_Cas2CT1978 [H]

EC number: NA

Molecular weight: Translated: 11611; Mature: 11611

Theoretical pI: Translated: 4.74; Mature: 4.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVIVTEAVPQRLRGYLSRWLLEVRAGVYVGNYSVRVRQKLWEVVCQQVGDGNAVLAWTS
CEEEEEHHHHHHHHHHHHHHHHHHHCCEEECCCHHHHHHHHHHHHHHHCCCCCEEEEEEC
CHESGFQFLTVGANCREQIDWDGLPLVAYTPRDNDRDDLVDL
CCCCCCEEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCC
>Mature Secondary Structure
MLVIVTEAVPQRLRGYLSRWLLEVRAGVYVGNYSVRVRQKLWEVVCQQVGDGNAVLAWTS
CEEEEEHHHHHHHHHHHHHHHHHHHCCEEECCCHHHHHHHHHHHHHHHCCCCCEEEEEEC
CHESGFQFLTVGANCREQIDWDGLPLVAYTPRDNDRDDLVDL
CCCCCCEEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2656660; 9278503; 7567469 [H]